Difference between revisions of "Supplementary data normal mode glucocerebrosidase"

From Bioinformatikpedia
(Nomad-Ref)
(Anisotropic Network Model)
 
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! Mode 10
 
! Mode 10
 
|-
 
|-
|[[File:anm_glucocerebrosidase_mode0006.gif |thumb|center|150px|'''Figure 26:''' Normal Mode 6 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0007.gif |thumb|center|150px|'''Figure 27:''' Normal Mode 7 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0008.gif |thumb|center|150px|'''Figure 28:''' Normal Mode 8 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0009.gif |thumb|center|150px|'''Figure 29:''' Normal Mode 9 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0010.gif |thumb|center|150px|'''Figure 30:''' Normal Mode 10 calculated with ANM]]
+
|[[File:anm_glucocerebrosidase_mode0006.gif |thumb|center|150px|Normal Mode 6 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0007.gif |thumb|center|150px|Normal Mode 7 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0008.gif |thumb|center|150px|Normal Mode 8 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0009.gif |thumb|center|150px|Normal Mode 9 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0010.gif |thumb|center|150px|Normal Mode 10 calculated with ANM]]
 
|-
 
|-
 
|colspan="10"|'''Inter Distance Analysis'''
 
|colspan="10"|'''Inter Distance Analysis'''
 
|-
 
|-
|[[File:anm_glucocerebrosidase_distmapscalar6.png |thumb|center|150px|'''Figure 31a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode6.png |thumb|center|150px|'''Figure 31b: Deformation Energy''']]<br/>Overall energy: 107191.169783064 || [[File:anm_glucocerebrosidase_distmapscalar7.png |thumb|center|150px|'''Figure 32a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode7.png |thumb|center|150px|'''Figure 32b: Deformation Energy''']]<br/>Overall energy: 112430.078797944 || [[File:anm_glucocerebrosidase_distmapscalar8.png |thumb|center|150px|'''Figure 33a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode8.png |thumb|center|150px|'''Figure 33b: Deformation Energy''']]<br/>Overall energy: 138939.176046648 || [[File:anm_glucocerebrosidase_distmapscalar9.png |thumb|center|150px|'''Figure 34a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode9.png |thumb|center|150px|'''Figure 34b: Deformation Energy''']]<br/>Overall energy: 156195.358655472 || [[File:anm_glucocerebrosidase_distmapscalar10.png |thumb|center|150px|'''Figure 35a: Distance Matrix''']]<br/>[[File:anm_glucocerebrosidase_mode10.png |thumb|center|150px|'''Figure 35b: Deformation Energy''']]<br/>Overall energy: 154660.33882932
+
|[[File:anm_glucocerebrosidase_distmapscalar6.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode6.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 107191.169783064 || [[File:anm_glucocerebrosidase_distmapscalar7.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode7.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 112430.078797944 || [[File:anm_glucocerebrosidase_distmapscalar8.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode8.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 138939.176046648 || [[File:anm_glucocerebrosidase_distmapscalar9.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode9.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 156195.358655472 || [[File:anm_glucocerebrosidase_distmapscalar10.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode10.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 154660.33882932
 
|-
 
|-
 
|colspan="10"|'''B-factors/mode fluctuations'''
 
|colspan="10"|'''B-factors/mode fluctuations'''
 
|-
 
|-
| [[File:anm_glucocerebrosidase_bfmode6.png |thumb|center|150px|'''Figure 36: B-factors/mode fluctuations''']] || [[File:anm_glucocerebrosidase_bfmode7.png |thumb|center|150px|'''Figure 37: B-factors/mode fluctuations''']] || [[File:anm_glucocerebrosidase_bfmode8.png |thumb|center|150px|'''Figure 38: B-factors/mode fluctuations''']] || [[File:anm_glucocerebrosidase_bfmode9.png |thumb|center|150px|'''Figure 39: B-factors/mode fluctuations''']] || [[File:anm_glucocerebrosidase_bfmode10.png |thumb|center|150px|'''Figure 40: B-factors/mode fluctuations''']]
+
| [[File:anm_glucocerebrosidase_bfmode6.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode7.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode8.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode9.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode10.png |thumb|center|150px|B-factors/mode fluctuations]]
 
|}
 
|}
   

Latest revision as of 08:27, 19 August 2011

This site provides additional data obtained in the normal mode analysis of glucocerebrosidase with different tools.


Anisotropic Network Model

Mode 6 Mode 7 Mode 8 Mode 9 Mode 10
Normal Mode 6 calculated with ANM
Normal Mode 7 calculated with ANM
Normal Mode 8 calculated with ANM
Normal Mode 9 calculated with ANM
Normal Mode 10 calculated with ANM
Inter Distance Analysis
Distance Matrix

Deformation Energy

Overall energy: 107191.169783064
Distance Matrix

Deformation Energy

Overall energy: 112430.078797944
Distance Matrix

Deformation Energy

Overall energy: 138939.176046648
Distance Matrix

Deformation Energy

Overall energy: 156195.358655472
Distance Matrix

Deformation Energy

Overall energy: 154660.33882932
B-factors/mode fluctuations
B-factors/mode fluctuations
B-factors/mode fluctuations
B-factors/mode fluctuations
B-factors/mode fluctuations
B-factors/mode fluctuations

Nomad-Ref

The following six modes show the rigid body motions calculated with Nomad-Ref.

Mode 1

Elastic Network - Mode 1

cRMS Plot - Mode 1
Mode 2

Elastic Network - Mode 2

cRMS Plot - Mode 2
Mode 3

Elastic Network - Mode 3

cRMS Plot - Mode 3
Mode 4'

Elastic Network - Mode 4

cRMS Plot - Mode 4
Mode 5

Elastic Network - Mode 5

cRMS Plot - Mode 4
Mode 6

Elastic network - Mode 6

cRMS Plot - Mode 6