Sequence Alignments TSD

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Revision as of 18:36, 3 May 2012 by Reeb (talk | contribs) (Undo revision 17320 by Reeb (Talk))

Sequence searches

There are several alignment methods provided by various initiatives, who tackle the problem of sequence searches. Here some of them are applied for the Hex A protein and analyzed. For the searches non redundant protein databases are used. The outputs are adapted to each other and put in comparison in order to determine the best results. A protocol containing the basic steps taken is available.

Blast

PSI-Blast

Iterations 2 2 10 10
E-value 0.002 10E-10 0.002 10E-10
Runtime
No. hits

Table 1: Different performances of PSI-Blast.


HHBlits