Sequence Alignments TSD

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Revision as of 18:11, 1 May 2012 by Reeb (talk | contribs) (cleanup, add protocol link)

Sequence searches

There are several alignment methods provided by various initiatives, who tackle the problem of sequence searches. Here some of them are applied for the Hex A protein and analyzed. For the searches non redundant protein databases are used. The outputs are adapted to each other and put in comparison in order to determine the best results. A protocol containing the basic steps taken is available.

Blast

PSI-Blast

Iterations 2 2 10 10
E-value 0.002 10E-10 0.002 10E-10
Runtime
No. hits

Table 1: Different performances of PSI-Blast.


HHBlits