Difference between revisions of "Sequence-based mutation analysis BCKDHA"

From Bioinformatikpedia
(Subset of mutations)
(Subset of mutations)
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== PSSM ==
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  +
PsiBlast was run using the following command:
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blastpgp -i sequence.fasta -j 5 -d /data/blast/nr/nr -C profile.ckp
   
 
==SNAP==
 
==SNAP==

Revision as of 17:45, 21 June 2011

Subset of mutations

Reference amino acid Mutated amino acid BLOSUM62 PAM1 PAM250
Position Residue Properties Structure Residue Properties Structure
29 G E
125 Q E
166 Y N
249 G S
264 C W
265 R W
326 I T
361 I V
409 F C
438 Y N


PSSM

PsiBlast was run using the following command: blastpgp -i sequence.fasta -j 5 -d /data/blast/nr/nr -C profile.ckp

SNAP

SIFT

Polyphen2