Difference between revisions of "Secondary Structure Prediction BCKDHA"

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(Created page with " == 1. Secondary structure prediction == == 2. Prediction of disordered regions == == 3. Prediction of transmembrane alpha-helices and signal peptides == == 4. Prediction of G…")
 
(3. Prediction of transmembrane alpha-helices and signal peptides)
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== 3. Prediction of transmembrane alpha-helices and signal peptides ==
 
== 3. Prediction of transmembrane alpha-helices and signal peptides ==
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=== Phobius and Polyphobius ===
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Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long.
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The rest of the amino acid is a non cytoplasmic protein sequence.
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{|
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!colspan=4" sp|P12694|ODBA_HUMAN
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|-
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|Signal | 1 | 34 |
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|-
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|Region | 1 | 16 | N-Region
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|-
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|Region | 17 | 25 | H-Region
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|-
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|Region | 26 | 34 | C-Region
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|-
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| TOPO_DOM | 35 | 445 | non cytoplasmic
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|}
   
 
== 4. Prediction of GO terms ==
 
== 4. Prediction of GO terms ==

Revision as of 13:01, 24 May 2011

1. Secondary structure prediction

2. Prediction of disordered regions

3. Prediction of transmembrane alpha-helices and signal peptides

Phobius and Polyphobius

Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long. The rest of the amino acid is a non cytoplasmic protein sequence.

P12694|ODBA_HUMAN
1 | 34 |
1 | 16 | N-Region
17 | 25 | H-Region
26 | 34 | C-Region
35 | 445 | non cytoplasmic

4. Prediction of GO terms