Difference between revisions of "Secondary Structure Prediction BCKDHA"

From Bioinformatikpedia
(Phobius and Polyphobius)
(Phobius and Polyphobius)
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Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long.
 
Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long.
 
The rest of the amino acid is a non cytoplasmic protein sequence. No part of the protein is predicted to be transmembrane spanning.
 
The rest of the amino acid is a non cytoplasmic protein sequence. No part of the protein is predicted to be transmembrane spanning.
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<tt>
 
 
{|
 
{|
!colspan=4" test
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!colspan=4" sp|P12694|ODBA_HUMAN
 
|-
 
|-
 
|Signal
 
|Signal
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| non cytoplasmic
 
| non cytoplasmic
 
|}
 
|}
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== 4. Prediction of GO terms ==
 
== 4. Prediction of GO terms ==

Revision as of 13:08, 24 May 2011

1. Secondary structure prediction

2. Prediction of disordered regions

3. Prediction of transmembrane alpha-helices and signal peptides

Phobius and Polyphobius

Phobius predicted a signal peptide with about 90% probability at the beginning of the sequence. The predicted signal peptide is 34 amino acids long. The rest of the amino acid is a non cytoplasmic protein sequence. No part of the protein is predicted to be transmembrane spanning.

P12694|ODBA_HUMAN
Signal 1 34
Region 1 16 N-Region
Region 17 25 H-Region
Region 26 34 C-Region
TOPO_DOM 35 445 non cytoplasmic

4. Prediction of GO terms