Difference between revisions of "Psipred"

From Bioinformatikpedia
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Then you should be able to run psipred in /apps/psipred_3.2/:
 
Then you should be able to run psipred in /apps/psipred_3.2/:
sudo ./runpsipred <path to your fasta-file>
+
<code>sudo ./runpsipred <path to your fasta-file></code>

Revision as of 12:48, 24 May 2011

PSIPRED

running locally

Change in /apps/psipred_3.2/runpsipred the following lines:

# The name of the BLAST data bank
set dbname = /data/blast/swiss/uniprot_sprot.fasta

# Where the NCBI programs have been installed
set ncbidir = /apps/blast_old/bin

# Where the PSIPRED V2 programs have been installed
set execdir = /apps/psipred_3.2/src

# Where the PSIPRED V2 data files have been installed
set datadir = /apps/psipred_3.2/data

Then you should be able to run psipred in /apps/psipred_3.2/: sudo ./runpsipred <path to your fasta-file>