Difference between revisions of "PsiBlast in Big80 (PKU)"

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PSSM of PAH of the [[Predicting_the_Effect_of_SNPs_(PKU)#Our Dataset|SNP-sites]]
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PSSM of PAH of the [[Predicting_the_Effect_of_SNPs_(PKU)#Our dataset|SNP-sites]]
   
 
Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts
 
Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts

Revision as of 13:56, 15 June 2012

PSSM of PAH of the SNP-sites

Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts
          A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V   A   R   N   D   C   Q   E   G   H   I   L   K   M   F   P   S   T   W   Y   V
  76 E    0  0  1  2 -1  2  4 -2  1 -5 -4  0 -2 -5 -3  0  1 -6 -3 -3    8   6   6   9   1   9  30   3   3   0   1   5   1   0   1   6   8   0   1   2  0.48 inf
  87 S   -1  1  1  0  1  0 -1 -2  1  1  0  0  2 -1  0 -1 -1  4  0  0    5   8   6   5   3   5   4   3   3   8   9   5   5   3   4   5   4   5   3   7  0.08 inf
 158 R    0  1  1 -1 -2  1  1  0 -1 -2 -2  1  1  1  1  1  1 -2 -1 -2    8   8   8   0   0   8   8   8   0   0   1   8   8   8   8   8   8   0   0   0  0.14 inf
 172 Q    0  0  0  0  2  1  0  0  1  0  0  0  1  0 -2  0  0 -3 -1  0    6   6   6   6   6   6   6   6   6   6   6   6   6   6   0   6   6   0   0   6  0.03 inf
 243 R    0  5 -3 -4 -1  0 -1 -3 -2 -1 -2 -1 -2 -3 -4  0 -1 -4  1  4    7  30   0   0   1   5   3   1   1   1   3   3   0   0   0   7   2   0   4  30  0.51 inf
 255 L   -3 -4 -4 -4  0 -4 -4 -4 -3  1  3 -4  3  6 -4 -3 -1 -2  2 -1    1   0   0   0   2   0   1   1   0   9  30   0   8  35   0   1   4   0   6   1  0.74 inf
 276 M   -2  0  1  4 -3  0  1  0  0 -2  0  0  0  0 -2 -1 -1 -3 -1 -1    1   3   7  31   0   1  12   6   2   0  10   6   4   4   1   3   1   0   2   6  0.24 inf
 322 A    3  1 -2 -2 -2  1 -1  0 -2 -1 -2  0  0 -2 -1  2  0 -3 -2 -1   43   7   0   0   0   7   2   6   0   3   2   3   2   1   1  16   3   0   0   3  0.27 inf
 337 G    0 -1  3  3 -3  1  0  0  1 -2 -2  0 -2 -4  2 -1 -1 -4 -3 -2    6   3  22  18   0   6   5   8   5   1   5   6   0   0  13   1   1   0   0   2  0.32 inf
 408 R   -1  5 -1  1 -4  0 -1 -3  0 -4 -1  4 -3 -4 -3 -2 -1 -4 -3 -3    4  42   2   7   0   2   2   1   3   0   7  23   0   0   0   1   4   0   0   1  0.74 inf
                     K         Lambda
Standard Ungapped    0.1380     0.3205
Standard Gapped      0.0410     0.2670
PSI Ungapped         0.1490     0.3176
PSI Gapped           0.0456     0.2670