Normal mode analysis TSD Journal

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Revision as of 17:08, 27 July 2012 by Reeb (talk | contribs) (elNemo)

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Input

PDB file 2gk1 was used as input. Chain A was extracted and two files prepared, one containing only the protein part and one also containing the ligand NGT as ATOMs (instead of HETATMs)


elNemo

elNomo was run at the respective webserver at default parameters except that the cutoff for elastic interactions was increased to 10 from the default 8.