Normal mode analysis HEXA

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Revision as of 12:52, 14 July 2011 by Uskat (talk | contribs) (Results)

Webnma

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Results

We analysed the five models with the lowest energy values. Webnma calculates fourteen different models with following energy values:

Mode Index Deformation Energy
7 1041.88
8 1318.21
9 1738.30
10 2841.31
11 3135.09
12 4100.18
13 3911.06
14 5337.50
15 5741.69
16 6513.85
17 6081.05
18 6882.96
19 7514.14
20 7943.67

We took the first five models (7, 8, 9, 10, 11).

Here you can see the normalized squared atomic displacments of our models:

model 7 model 8 model 9 model 10 model 11
normalized squared atomic displacments of model 7
normalized squared atomic displacments of model 8
normalized squared atomic displacments of model 9
normalized squared atomic displacments of model 10
normalized squared atomic displacments of model 11


Here you can see the motion of our analyses.

model 7 model 8 model 9 model 10 model 11
normalized squared atomic displacments of model 7
normalized squared atomic displacments of model 8
normalized squared atomic displacments of model 9
normalized squared atomic displacments of model 10
normalized squared atomic displacments of model 11

Discussion

El Nemo

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Results

Discussion

Anisotropic Network Model web server

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Results

Discussion

NOMAD-Ref

General information

Results

model 1 model 2 model 3 model 4 model 5
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model 1 model 2 model 3 model 4 model 5
normalized squared atomic displacments of model 7
normalized squared atomic displacments of model 8
normalized squared atomic displacments of model 9
normalized squared atomic displacments of model 10
normalized squared atomic displacments of model 11

All-atom NMA using Gromacs on the NOMAD-Ref server

General information

Results