Difference between revisions of "Normal mode analysis HEXA"

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(Webnma)
(Results)
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=== Results ===
 
=== Results ===
 
We took the first five models (7, 8, 9, 10, 11).
 
 
Here you can see the normalized squared atomic displacments of our models:
 
   
 
{| border="1" style="text-align:center; border-spacing:0;"
 
{| border="1" style="text-align:center; border-spacing:0;"
|model 7
+
|model 1
|model 8
+
|model 2
|model 9
+
|model 3
|model 10
+
|model 4
|model 11
+
|model 5
 
|-
 
|-
 
|[[Image:mode_1_plot.png|thumb|150px|...]]
 
|[[Image:mode_1_plot.png|thumb|150px|...]]
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|}
 
|}
   
 
Here you can see the motion of our analyses.
 
   
 
{| border="1" style="text-align:center; border-spacing:0;"
 
{| border="1" style="text-align:center; border-spacing:0;"
|model 7
+
|model 1
|model 8
+
|model 2
|model 9
+
|model 3
|model 10
+
|model 4
|model 11
+
|model 5
 
|-
 
|-
|[[Image:model7.gif|thumb|150px|normalized squared atomic displacments of model 7]]
+
|[[Image:model_1.png|thumb|150px|normalized squared atomic displacments of model 7]]
|[[Image:webnma_model8.gif|thumb|150px|normalized squared atomic displacments of model 8]]
+
|[[Image:model_2.png|thumb|150px|normalized squared atomic displacments of model 8]]
|[[Image:webnma_model9.gif|thumb|150px|normalized squared atomic displacments of model 9]]
+
|[[Image:model_3.png|thumb|150px|normalized squared atomic displacments of model 9]]
|[[Image:webnma_model10.gif|thumb|150px|normalized squared atomic displacments of model 10]]
+
|[[Image:model_4.png|thumb|150px|normalized squared atomic displacments of model 10]]
|[[Image:webnma_model11.gif|thumb|150px|normalized squared atomic displacments of model 11]]
+
|[[Image:model_5.png|thumb|150px|normalized squared atomic displacments of model 11]]
 
|-
 
|-
 
|}
 
|}

Revision as of 12:52, 14 July 2011

Webnma

General information

Results

We analysed the five models with the lowest energy values. Webnma calculates fourteen different models with following energy values:

Mode Index Deformation Energy
7 1041.88
8 1318.21
9 1738.30
10 2841.31
11 3135.09
12 4100.18
13 3911.06
14 5337.50
15 5741.69
16 6513.85
17 6081.05
18 6882.96
19 7514.14
20 7943.67

We took the first five models (7, 8, 9, 10, 11).

Here you can see the normalized squared atomic displacments of our models:

model 7 model 8 model 9 model 10 model 11
normalized squared atomic displacments of model 7
normalized squared atomic displacments of model 8
normalized squared atomic displacments of model 9
normalized squared atomic displacments of model 10
normalized squared atomic displacments of model 11


Here you can see the motion of our analyses.

model 7 model 8 model 9 model 10 model 11
normalized squared atomic displacments of model 7
normalized squared atomic displacments of model 8
normalized squared atomic displacments of model 9
normalized squared atomic displacments of model 10
normalized squared atomic displacments of model 11

Discussion

El Nemo

General information

Results

Discussion

Anisotropic Network Model web server

General information

Results

Discussion

NOMAD-Ref

General information

Results

model 1 model 2 model 3 model 4 model 5
...
...
...
...
...


model 1 model 2 model 3 model 4 model 5
normalized squared atomic displacments of model 7
normalized squared atomic displacments of model 8
normalized squared atomic displacments of model 9
normalized squared atomic displacments of model 10
normalized squared atomic displacments of model 11

All-atom NMA using Gromacs on the NOMAD-Ref server

General information

Results