Difference between revisions of "Normal mode analysis HEXA"

From Bioinformatikpedia
(Normal mode analysis)
(Normal mode analysis)
Line 1: Line 1:
== Normal mode analysis ==
+
== Webnma ==
 
=== Webnma ===
 
   
 
==== General information ====
 
==== General information ====
Line 94: Line 92:
 
|}
 
|}
   
=== NOMAD-Ref ===
+
== NOMAD-Ref ==
   
==== General information ====
+
=== General information ===
   
==== Results ====
+
=== Results ===
   
   
=== All-atom NMA using Gromacs on the NOMAD-Ref server ===
+
== All-atom NMA using Gromacs on the NOMAD-Ref server ==
   
==== General information ====
+
=== General information ===
   
==== Results ====
+
=== Results ===

Revision as of 12:33, 14 July 2011

Webnma

General information

Results

We analysed the five models with the lowest energy values. Webnma calculates fourteen different models with following energy values:

Mode Index Deformation Energy
7 1041.88
8 1318.21
9 1738.30
10 2841.31
11 3135.09
12 4100.18
13 3911.06
14 5337.50
15 5741.69
16 6513.85
17 6081.05
18 6882.96
19 7514.14
20 7943.67

We took the first five models (7, 8, 9, 10, 11).

Here you can see the normalized squared atomic displacments of our models:

model 7 model 8 model 9 model 10 model 11
normalized squared atomic displacments of model 7
normalized squared atomic displacments of model 8
normalized squared atomic displacments of model 9
normalized squared atomic displacments of model 10
normalized squared atomic displacments of model 11


Here you can see the motion of our analyses.

model 7 model 8 model 9 model 10 model 11
normalized squared atomic displacments of model 7
normalized squared atomic displacments of model 8
normalized squared atomic displacments of model 9
normalized squared atomic displacments of model 10
normalized squared atomic displacments of model 11

NOMAD-Ref

General information

Results

All-atom NMA using Gromacs on the NOMAD-Ref server

General information

Results