Normal Mode Analysis of Glucocerebrosidase

From Bioinformatikpedia
Revision as of 23:34, 15 July 2011 by Braunt (talk | contribs) (WEBnm@)

Introduction

Elastic and Gaussian Network Models

WEBnm@

WEBnm@ is a web-server which provides automated computation and analysis of low-frequency normal modes of proteins. <ref>Hollup SM, Sælensminde G, Reuter N. WEBnm@: a web application for normal mode analysis of proteins BMC Bioinformatics. 2005 Mar 11;6(1):52 </ref>

Results


Figure 1: Normal Mode 7 calculated with WEBnm@
Figure 2: Normal Mode 8 calculated with WEBnm@
Figure 3: Normal Mode 9 calculated with WEBnm@
Figure 4: Normal Mode 10 calculated with WEBnm@
Figure 5: Normal Mode 11 calculated with WEBnm@

elNémo

Results


Figure 6: Normal Mode 7 calculated with elNémo
Figure 7: Normal Mode 8 calculated with elNémo
Figure 8: Normal Mode 9 calculated with elNémo
Figure 9: Normal Mode 10 calculated with elNémo
Figure 10: Normal Mode 11 calculated with elNémo

Discussion

Anisotropic Network Model

oGNM

NOMAD-Ref

Discussion

All-atom NMA

Comparison NMA / MD