Difference between revisions of "Multiple Sequence Alignment: T-Coffee - set 1"

From Bioinformatikpedia
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<span style="color:#a30909">P04062 DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ</span>
+
<span style="color:#a30909">P04062 DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQP<span style="color:#9725c4">E</span>QKFQ</span>
 
tr|A9UD35|A9UD35_DELDE DPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQP<span style="color:#9725c4">D</span>QKFQ
 
tr|A9UD35|A9UD35_DELDE DPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQP<span style="color:#9725c4">D</span>QKFQ
 
<span style="color:#9725c4">tr|D1L2S0|D1L2S0_BALPH</span> DPLTLPDPGTFSRFESTRSGRRMELSLGAIQANRTGTGLLLTLQP<span style="color:#9725c4">-----</span>
 
<span style="color:#9725c4">tr|D1L2S0|D1L2S0_BALPH</span> DPLTLPDPGTFSRFESTRSGRRMELSLGAIQANRTGTGLLLTLQP<span style="color:#9725c4">-----</span>

Revision as of 14:47, 6 May 2013

The native protein is colored red in the Alignment.

CLUSTAL FORMAT for T-COFFEE Version_8.47 [1] [MODE:  ], CPU=0.12 sec, SCORE=98, Nseq=10, Len=621 

P04062                  --------------------------------------------------
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          --------------------------------------------------
pdb|pdb|2nt1_A          --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE  --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN    --------------------------------------------------
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  --------------------------------------------------
tr|B7Z6S9|B7Z6S9_HUMAN  MSDRLFSNPGPAPTPQGCFSRGCGWSGCILPSESYCAGPQSPVPPRRLCR
                                                                          

P04062                  -----------------------------------MEFSSPSREECPKPL
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          --------------------------------------------------
pdb|pdb|2nt1_A          --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE  -----------------------------------MELSSPSREGCLKCP
sp|Q2KHZ8|GLCM_BOVIN    -----------------------------------MELSSPSREEYPMPR
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  -----------------------------------MEFSSPSREECPKPL
tr|B7Z6S9|B7Z6S9_HUMAN  LRWDFVLPPVGAAVSLRRRDSGTPVVFSSSNDPEGMEFSSPSREECPKPL
                                                                          

P04062                  SRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSF
tr|A9UD35|A9UD35_DELDE  -----------------------------------------CNATYCDSL
tr|D1L2S0|D1L2S0_BALPH  -------------------------------------VVCVCNATYCDSL
pdb|pdb|3gxi_A          ------------------------ARPCIPKSFGYSSVVCVCNATYCDSF
pdb|pdb|2nt1_A          ------------------------ARPCIPKSFGYSSVVCVCNATYCDSF
tr|F6WDY8|F6WDY8_HORSE  GRVGIMAASFMGLLLLQAVSRASGARPCSPKSFGYSSVVCVCNATYCDSL
sp|Q2KHZ8|GLCM_BOVIN    GRVGIMAASLMGLLLLHTVSWVSGARPCSPKSFGYSSVVCVCNGTYCDSL
tr|F5CB27|F5CB27_DELCA  -----------------------------------------CNATYCDSL
tr|F5H241|F5H241_HUMAN  SRVSIMAGSLTGLLLLQAVSWA----------------------------
tr|B7Z6S9|B7Z6S9_HUMAN  SRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSF
                                                                          

P04062                  DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ
tr|A9UD35|A9UD35_DELDE  DPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQ
tr|D1L2S0|D1L2S0_BALPH  DPLTLPDPGTFSRFESTRSGRRMELSLGAIQANRTGTGLLLTLQP-----
pdb|pdb|3gxi_A          DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ
pdb|pdb|2nt1_A          DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ
tr|F6WDY8|F6WDY8_HORSE  DPLTLPAPGTFSRYESTRSGRRMELSLGAIQANRTGTGLLLTLQPDQKFQ
sp|Q2KHZ8|GLCM_BOVIN    DPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQ
tr|F5CB27|F5CB27_DELCA  DPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD----
tr|F5H241|F5H241_HUMAN  --------------------------------------------------
tr|B7Z6S9|B7Z6S9_HUMAN  DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ
                                                                          

P04062                  KVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASC
tr|A9UD35|A9UD35_DELDE  KVK-----------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          KVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASC
pdb|pdb|2nt1_A          KVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASC
tr|F6WDY8|F6WDY8_HORSE  KVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASC
sp|Q2KHZ8|GLCM_BOVIN    KVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASC
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  -----------------------------------SGIGYNIIRVPMASC
tr|B7Z6S9|B7Z6S9_HUMAN  KVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASC
                                                                          

P04062                  DFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          DFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA
pdb|pdb|2nt1_A          DFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA
tr|F6WDY8|F6WDY8_HORSE  DFSIRVYTYADTPDDFQLHNFSLPEEDVKLKIPLIHQALELSQRPISLFA
sp|Q2KHZ8|GLCM_BOVIN    DFSIRTYTYDDSPDDFQLLNFSLPEEDVKLKIPLIHQALELANRSVSLFA
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  DFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA
tr|B7Z6S9|B7Z6S9_HUMAN  DFSIRTYTYADTPDDFQLHNFGLPEEDTKLKIPLIHRALQLAQRPVSLLA
                                                                          

P04062                  SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ
pdb|pdb|2nt1_A          SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ
tr|F6WDY8|F6WDY8_HORSE  SPWTSPTWLKTNGAVNGKGSLKGQPGDRYHQTWAKYFVKFLDAYAEHKLQ
sp|Q2KHZ8|GLCM_BOVIN    SPWTSPTWLKTNGAVNGKGTLKGQAGDLYHKTWARYFVKFLDAYAEHKLR
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ
tr|B7Z6S9|B7Z6S9_HUMAN  SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ
                                                                          

P04062                  FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV
pdb|pdb|2nt1_A          FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV
tr|F6WDY8|F6WDY8_HORSE  FWAVTTENEPSAGLISGYPFQCLGFTPEHQRDFIARDLGPTLANSTHRNV
sp|Q2KHZ8|GLCM_BOVIN    FWAVTAENEPTAGLLTGYPFQCLGFTPEHQRDFIARDLGPILANSTHRDV
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV
tr|B7Z6S9|B7Z6S9_HUMAN  FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV
                                                                          

P04062                  RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE
pdb|pdb|2nt1_A          RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE
tr|F6WDY8|F6WDY8_HORSE  RVLMLDDQRLLLPRWAQVVLADPEAAKYVHGIAVHWYLDFLAPAKATLGE
sp|Q2KHZ8|GLCM_BOVIN    RLLMLDDQRLLLPRWAQVVLADPEAAKYVHGIAVHWYLDFLAPAKATLGE
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE
tr|B7Z6S9|B7Z6S9_HUMAN  RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE
                                                                          

P04062                  THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV
pdb|pdb|2nt1_A          THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV
tr|F6WDY8|F6WDY8_HORSE  THRLFPDMMLFASEACVGSKFWEQSVRLGSWDRGVQYSHSIITNLLYHVA
sp|Q2KHZ8|GLCM_BOVIN    THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMRYSHSIITNLLYHVV
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV
tr|B7Z6S9|B7Z6S9_HUMAN  THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV
                                                                          

P04062                  GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF
pdb|pdb|2nt1_A          GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF
tr|F6WDY8|F6WDY8_HORSE  GWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKF
sp|Q2KHZ8|GLCM_BOVIN    GWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKF
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF
tr|B7Z6S9|B7Z6S9_HUMAN  GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF
                                                                          

P04062                  IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
tr|A9UD35|A9UD35_DELDE  --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH  --------------------------------------------------
pdb|pdb|3gxi_A          IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
pdb|pdb|2nt1_A          IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
tr|F6WDY8|F6WDY8_HORSE  IPEGSQRVGLDASEKTNLDTVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
sp|Q2KHZ8|GLCM_BOVIN    IPEGSQRVGLVASKKSDLDTVALLRPDGSAVAVVLNRSSKDVPLTIKDPA
tr|F5CB27|F5CB27_DELCA  --------------------------------------------------
tr|F5H241|F5H241_HUMAN  IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
tr|B7Z6S9|B7Z6S9_HUMAN  IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
                                                                          

P04062                  VGFLETISPGYSIHTYLWRRQ
tr|A9UD35|A9UD35_DELDE  --------------------G
tr|D1L2S0|D1L2S0_BALPH  --------------------D
pdb|pdb|3gxi_A          VGFLETISPGYSIHTYLWHRQ
pdb|pdb|2nt1_A          VGFLETISPGYSIHTYLWHRQ
tr|F6WDY8|F6WDY8_HORSE  VGFLETVSPGYSIHTYLWRRQ
sp|Q2KHZ8|GLCM_BOVIN    VGFMETVSPGYSIHTYLWRRQ
tr|F5CB27|F5CB27_DELCA  ---------------------
tr|F5H241|F5H241_HUMAN  VGFLETISPGYSIHTYLWRRQ
tr|B7Z6S9|B7Z6S9_HUMAN  VGFLETISPGYSIHTYLWRRQ