Multiple Sequence Alignment: Espresso - set 1

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<html><head> <meta http-equiv="content-type" content="text/html; charset=UTF-8"><style> SPAN { font-family: courier new, courier-new, courier, monospace; font-weight: bold; font-size: 11pt;} SPAN { line-height:100%} SPAN { white-space: pre} SPAN.value0 {background: #6666FF} SPAN.value1 {background: #00FF00} SPAN.value2 {background: #66FF00} SPAN.value3 {background: #CCFF00} SPAN.value4 {background: #FFFF00} SPAN.value5 {background: #FFCC00} SPAN.value6 {background: #FF9900} SPAN.value7 {background: #FF6600} SPAN.value8 {background: #FF3300} SPAN.value9 {background: #FF2000} SPAN.valuedefault {} SPAN.valuegap {} SPAN.valueink {background: 000000} </style></head><body>T-COFFEE, Version_9.03.r1318 (2012-07-12 19:05:45 - Revision 1318 - Build 366)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
sp|P04062|GLCM_   :  99
tr|A9UD35|A9UD3   :  92
tr|D1L2S0|D1L2S   :  98
pdb|pdb|3gxi_A    :  99
pdb|pdb|2nt1_A    :  99
tr|F6WDY8|F6WDY   :  99
sp|Q2KHZ8|GLCM_   :  99
tr|F5CB27|F5CB2   :  98
tr|F5H241|F5H24   :  98
tr|B7Z6S9|B7Z6S   :  99
cons              :  99

sp|P04062|GLCM_       1 ---------------------------------------------------------------    0 
tr|A9UD35|A9UD3       1 ---------------------------------------------------------------    0 
tr|D1L2S0|D1L2S       1 ---------------------------------------------------------------    0 
pdb|pdb|3gxi_A        1 ---------------------------------------------------------------    0 
pdb|pdb|2nt1_A        1 ---------------------------------------------------------------    0 
tr|F6WDY8|F6WDY       1 ---------------------------------------------------------------    0 
sp|Q2KHZ8|GLCM_       1 ---------------------------------------------------------------    0 
tr|F5CB27|F5CB2       1 ---------------------------------------------------------------    0 
tr|F5H241|F5H24       1 ---------------------------------------------------------------    0 
tr|B7Z6S9|B7Z6S       1 MSDRLFSNPGPAPTPQGCFSRGCGWSGCILPSESYCAGPQSPVPPRRLCRLRWDFVLPPVGAA   63 

cons                  1                                                                   63 


sp|P04062|GLCM_       1 ----------------------MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGAR   41 
tr|A9UD35|A9UD3       1 ---------------------------------------------------------------    0 
tr|D1L2S0|D1L2S       1 ---------------------------------------------------------------    0 
pdb|pdb|3gxi_A        1 -------------------------------------------------------------AR    2 
pdb|pdb|2nt1_A        1 -------------------------------------------------------------AR    2 
tr|F6WDY8|F6WDY       1 ----------------------MELSSPSREGCLKCPGRVGIMAASFMGLLLLQAVSRASGAR   41 
sp|Q2KHZ8|GLCM_       1 ----------------------MELSSPSREEYPMPRGRVGIMAASLMGLLLLHTVSWVSGAR   41 
tr|F5CB27|F5CB2       1 ---------------------------------------------------------------    0 
tr|F5H241|F5H24       1 ---------------------------------------------------------------    0 
tr|B7Z6S9|B7Z6S      64 VSLRRRDSGTPVVFSSSNDPEGMEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGAR  126 

cons                 64                                                                  126 


sp|P04062|GLCM_      42 PCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGL  104 
tr|A9UD35|A9UD3       1 ---------------CNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGL   48 
tr|D1L2S0|D1L2S       1 -----------VVCVCNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGAIQANRTGTGL   52 
pdb|pdb|3gxi_A        3 PCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGL   65 
pdb|pdb|2nt1_A        3 PCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGL   65 
tr|F6WDY8|F6WDY      42 PCSPKSFGYSSVVCVCNATYCDSLDPLTLPAPGTFSRYESTRSGRRMELSLGAIQANRTGTGL  104 
sp|Q2KHZ8|GLCM_      42 PCSPKSFGYSSVVCVCNGTYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGL  104 
tr|F5CB27|F5CB2       1 ---------------CNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGL   48 
tr|F5H241|F5H24       1 ----MEF--SS-----------------------PSREECPKPLSRVSIMAGSL------TGL   28 
tr|B7Z6S9|B7Z6S     127 PCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGL  189 

cons                127                                    ** *..:.  *:.:  *.:      ***  189 


sp|P04062|GLCM_     105 LLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDF  167 
tr|A9UD35|A9UD3      49 LLTLQPDQKFQKVKG------------------------------------------------   63 
tr|D1L2S0|D1L2S      53 LLTLQPD--------------------------------------------------------   59 
pdb|pdb|3gxi_A       66 LLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDF  128 
pdb|pdb|2nt1_A       66 LLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDF  128 
tr|F6WDY8|F6WDY     105 LLTLQPDQKFQKVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASCDF  167 
sp|Q2KHZ8|GLCM_     105 LLTLQPDQKFQKVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASCDF  167 
tr|F5CB27|F5CB2      49 LLTLQPD--------------------------------------------------------   55 
tr|F5H241|F5H24      29 LL-LQ-------------AV---------------------SWAS--GIGYNIIRVPMASCDF   54 
tr|B7Z6S9|B7Z6S     190 LLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDF  252 

cons                190 ** **                                                            252 


sp|P04062|GLCM_     168 SIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAV  230 
tr|A9UD35|A9UD3      64 ---------------------------------------------------------------   63 
tr|D1L2S0|D1L2S      60 ---------------------------------------------------------------   59 
pdb|pdb|3gxi_A      129 SIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAV  191 
pdb|pdb|2nt1_A      129 SIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAV  191 
tr|F6WDY8|F6WDY     168 SIRVYTYADTPDDFQLHNFSLPEEDVKLKIPLIHQALELSQRPISLFASPWTSPTWLKTNGAV  230 
sp|Q2KHZ8|GLCM_     168 SIRTYTYDDSPDDFQLLNFSLPEEDVKLKIPLIHQALELANRSVSLFASPWTSPTWLKTNGAV  230 
tr|F5CB27|F5CB2      56 ---------------------------------------------------------------   55 
tr|F5H241|F5H24      55 SIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAV  117 
tr|B7Z6S9|B7Z6S     253 SIRTYTYADTPDDFQLHNFGLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAV  315 

cons                253                                                                  315 


sp|P04062|GLCM_     231 NGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPE  293 
tr|A9UD35|A9UD3      64 ---------------------------------------------------------------   63 
tr|D1L2S0|D1L2S      60 ---------------------------------------------------------------   59 
pdb|pdb|3gxi_A      192 NGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPE  254 
pdb|pdb|2nt1_A      192 NGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPE  254 
tr|F6WDY8|F6WDY     231 NGKGSLKGQPGDRYHQTWAKYFVKFLDAYAEHKLQFWAVTTENEPSAGLISGYPFQCLGFTPE  293 
sp|Q2KHZ8|GLCM_     231 NGKGTLKGQAGDLYHKTWARYFVKFLDAYAEHKLRFWAVTAENEPTAGLLTGYPFQCLGFTPE  293 
tr|F5CB27|F5CB2      56 ---------------------------------------------------------------   55 
tr|F5H241|F5H24     118 NGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPE  180 
tr|B7Z6S9|B7Z6S     316 NGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPE  378 

cons                316                                                                  378 


sp|P04062|GLCM_     294 HQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFL  356 
tr|A9UD35|A9UD3      64 ---------------------------------------------------------------   63 
tr|D1L2S0|D1L2S      60 ---------------------------------------------------------------   59 
pdb|pdb|3gxi_A      255 HQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFL  317 
pdb|pdb|2nt1_A      255 HQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFL  317 
tr|F6WDY8|F6WDY     294 HQRDFIARDLGPTLANSTHRNVRVLMLDDQRLLLPRWAQVVLADPEAAKYVHGIAVHWYLDFL  356 
sp|Q2KHZ8|GLCM_     294 HQRDFIARDLGPILANSTHRDVRLLMLDDQRLLLPRWAQVVLADPEAAKYVHGIAVHWYLDFL  356 
tr|F5CB27|F5CB2      56 ---------------------------------------------------------------   55 
tr|F5H241|F5H24     181 HQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFL  243 
tr|B7Z6S9|B7Z6S     379 HQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFL  441 

cons                379                                                                  441 


sp|P04062|GLCM_     357 APAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTD  419 
tr|A9UD35|A9UD3      64 ---------------------------------------------------------------   63 
tr|D1L2S0|D1L2S      60 ---------------------------------------------------------------   59 
pdb|pdb|3gxi_A      318 APAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTD  380 
pdb|pdb|2nt1_A      318 APAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTD  380 
tr|F6WDY8|F6WDY     357 APAKATLGETHRLFPDMMLFASEACVGSKFWEQSVRLGSWDRGVQYSHSIITNLLYHVAGWTD  419 
sp|Q2KHZ8|GLCM_     357 APAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMRYSHSIITNLLYHVVGWTD  419 
tr|F5CB27|F5CB2      56 ---------------------------------------------------------------   55 
tr|F5H241|F5H24     244 APAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTD  306 
tr|B7Z6S9|B7Z6S     442 APAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTD  504 

cons                442                                                                  504 


sp|P04062|GLCM_     420 WNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKND  482 
tr|A9UD35|A9UD3      64 ---------------------------------------------------------------   63 
tr|D1L2S0|D1L2S      60 ---------------------------------------------------------------   59 
pdb|pdb|3gxi_A      381 WNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKND  443 
pdb|pdb|2nt1_A      381 WNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKND  443 
tr|F6WDY8|F6WDY     420 WNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKFIPEGSQRVGLDASEKTN  482 
sp|Q2KHZ8|GLCM_     420 WNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASKKSD  482 
tr|F5CB27|F5CB2      56 ---------------------------------------------------------------   55 
tr|F5H241|F5H24     307 WNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKND  369 
tr|B7Z6S9|B7Z6S     505 WNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKND  567 

cons                505                                                                  567 


sp|P04062|GLCM_     483 LDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ  536 
tr|A9UD35|A9UD3      64 ------------------------------------------------------   63 
tr|D1L2S0|D1L2S      60 ------------------------------------------------------   59 
pdb|pdb|3gxi_A      444 LDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ  497 
pdb|pdb|2nt1_A      444 LDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ  497 
tr|F6WDY8|F6WDY     483 LDTVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETVSPGYSIHTYLWRRQ  536 
sp|Q2KHZ8|GLCM_     483 LDTVALLRPDGSAVAVVLNRSSKDVPLTIKDPAVGFMETVSPGYSIHTYLWRRQ  536 
tr|F5CB27|F5CB2      56 ------------------------------------------------------   55 
tr|F5H241|F5H24     370 LDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ  423 
tr|B7Z6S9|B7Z6S     568 LDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ  621 

cons                568                                                         621 





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