Difference between revisions of "Multiple Sequence Alignment: ClustalW - set 1"
From Bioinformatikpedia
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− | tr|A9UD35|A9UD35_DELDE --------------------------------<span style="color:#0000FF">CNATYCDSLDPLTLPDPG |
+ | tr|A9UD35|A9UD35_DELDE --------------------------------<span style="color:#0000FF">CNATYCDSLDPLTLPDPG</span> |
− | tr|F5CB27|F5CB27_DELCA --------------------------------CNATYCDSLDPLTLPDPG |
+ | tr|F5CB27|F5CB27_DELCA --------------------------------<span style="color:#0000FF">CNATYCDSLDPLTLPDPG</span> |
− | sp|Q2KHZ8|GLCM_BOVIN -------------- |
+ | sp|Q2KHZ8|GLCM_BOVIN --------------GARPCSPKSFGYSSVVCV<span style="color:#0000FF">CNGTYCDSLDPLTLPDPG</span> |
− | tr|D1L2S0|D1L2S0_BALPH ---------------------------- |
+ | tr|D1L2S0|D1L2S0_BALPH ----------------------------VVCV<span style="color:#0000FF">CNATYCDSLDPLTLPDPG</span> |
− | tr|F6WDY8|F6WDY8_HORSE -------------- |
+ | tr|F6WDY8|F6WDY8_HORSE --------------GARPCSPKSFGYSSVVCV<span style="color:#0000FF">CNATYCDSLDPLTLPAPG</span> |
− | P04062 |
+ | P04062 PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSI<span style="color:#0000FF">RTYTYADTPDDFQLHN--</span> |
− | tr|F5H241|F5H241_HUMAN -------------- |
+ | tr|F5H241|F5H241_HUMAN --------------GIGYNIIRVPMASCDFSI<span style="color:#0000FF">RTYTYADTPDDFQLHN--</span> |
− | tr|B7Z6S9|B7Z6S9_HUMAN |
+ | tr|B7Z6S9|B7Z6S9_HUMAN PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSI<span style="color:#0000FF">RTYTYADTPDDFQLHN--</span> |
− | pdb|pdb|3gxi_A |
+ | pdb|pdb|3gxi_A PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSI<span style="color:#0000FF">RTYTYADTPDDFQLHN--</span> |
− | pdb|pdb|2nt1_A |
+ | pdb|pdb|2nt1_A PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSI<span style="color:#0000FF">RTYTYADTPDDFQLHN--</span> |
− | . **.*: * : * |
+ | <span style="color:#0000FF"> . **.*: * : * </span> |
− | tr|A9UD35|A9UD35_DELDE TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD</span>QKFQKVKG----- |
+ | tr|A9UD35|A9UD35_DELDE <span style="color:#0000FF">TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD</span>QKFQKVKG----- |
− | tr|F5CB27|F5CB27_DELCA TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD------------- |
+ | tr|F5CB27|F5CB27_DELCA <span style="color:#0000FF">TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD</span>------------- |
− | sp|Q2KHZ8|GLCM_BOVIN |
+ | sp|Q2KHZ8|GLCM_BOVIN <span style="color:#0000FF">TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD</span>QKFQKVKGFGGAM |
− | tr|D1L2S0|D1L2S0_BALPH TFSRFESTRSGRRMELSLGAIQANRTGTGLLLTLQPD------------- |
+ | tr|D1L2S0|D1L2S0_BALPH <span style="color:#0000FF">TFSRFESTRSGRRMELSLGAIQANRTGTGLLLTLQPD</span>------------- |
− | tr|F6WDY8|F6WDY8_HORSE |
+ | tr|F6WDY8|F6WDY8_HORSE <span style="color:#0000FF">TFSRYESTRSGRRMELSLGAIQANRTGTGLLLTLQPD</span>QKFQKVKGFGGAM |
− | P04062 -FSLPEED- |
+ | P04062 <span style="color:#0000FF">-FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTS</span>PTWLKTNG----- |
− | tr|F5H241|F5H241_HUMAN -FSLPEED- |
+ | tr|F5H241|F5H241_HUMAN <span style="color:#0000FF">-FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTS</span>PTWLKTNG----- |
− | tr|B7Z6S9|B7Z6S9_HUMAN -FGLPEED- |
+ | tr|B7Z6S9|B7Z6S9_HUMAN <span style="color:#0000FF">-FGLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTS</span>PTWLKTNG----- |
− | pdb|pdb|3gxi_A -FSLPEED- |
+ | pdb|pdb|3gxi_A <span style="color:#0000FF">-FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTS</span>PTWLKTNG----- |
− | pdb|pdb|2nt1_A -FSLPEED- |
+ | pdb|pdb|2nt1_A <span style="color:#0000FF">-FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTS</span>PTWLKTNG----- |
*. *. : :: * ::* : ..** : .. |
*. *. : :: * ::* : ..** : .. |
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Revision as of 23:19, 5 May 2013
CLUSTAL 2.1 multiple sequence alignment
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE -------------------------------------------------- P04062 -------------------------------------------------- tr|F5H241|F5H241_HUMAN -------------------------------------------------- tr|B7Z6S9|B7Z6S9_HUMAN MSDRLFSNPGPAPTPQGCFSRGCGWSGCILPSESYCAGPQSPVPPRRLCR pdb|pdb|3gxi_A -------------------------------------------------- pdb|pdb|2nt1_A -------------------------------------------------- tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN -----------------------------------MELSSP--------S tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE -----------------------------------MELSSP--------S P04062 -----------------------------------MEFSSP--------S tr|F5H241|F5H241_HUMAN -----------------------------------MEFSSP--------S tr|B7Z6S9|B7Z6S9_HUMAN LRWDFVLPPVGAAVSLRRRDSGTPVVFSSSNDPEGMEFSSP--------S pdb|pdb|3gxi_A ------------ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFS pdb|pdb|2nt1_A ------------ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFS tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN REEYPMPRGRVGIMAASLMG-------LLLLHTVSWVS------------ tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE REGCLKCPGRVGIMAASFMG-------LLLLQAVSRAS------------ P04062 REECPKPLSRVSIMAGSLTG-------LLLLQ-------------AVSWA tr|F5H241|F5H241_HUMAN REECPKPLSRVSIMAGSLTG-------LLLLQ-------------AVSWA tr|B7Z6S9|B7Z6S9_HUMAN REECPKPLSRVSIMAGSLTG-------LLLLQ-------------AVSWA pdb|pdb|3gxi_A RYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDA pdb|pdb|2nt1_A RYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDA tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE -------------------------------------------------- P04062 SGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRR tr|F5H241|F5H241_HUMAN S------------------------------------------------- tr|B7Z6S9|B7Z6S9_HUMAN SGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRR pdb|pdb|3gxi_A AALN---------------------------------------------- pdb|pdb|2nt1_A AALN---------------------------------------------- tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE -------------------------------------------------- P04062 MELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSP tr|F5H241|F5H241_HUMAN -------------------------------------------------- tr|B7Z6S9|B7Z6S9_HUMAN MELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSP pdb|pdb|3gxi_A --------------------------------------------ILALSP pdb|pdb|2nt1_A --------------------------------------------ILALSP tr|A9UD35|A9UD35_DELDE --------------------------------CNATYCDSLDPLTLPDPG tr|F5CB27|F5CB27_DELCA --------------------------------CNATYCDSLDPLTLPDPG sp|Q2KHZ8|GLCM_BOVIN --------------GARPCSPKSFGYSSVVCVCNGTYCDSLDPLTLPDPG tr|D1L2S0|D1L2S0_BALPH ----------------------------VVCVCNATYCDSLDPLTLPDPG tr|F6WDY8|F6WDY8_HORSE --------------GARPCSPKSFGYSSVVCVCNATYCDSLDPLTLPAPG P04062 PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN-- tr|F5H241|F5H241_HUMAN --------------GIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN-- tr|B7Z6S9|B7Z6S9_HUMAN PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN-- pdb|pdb|3gxi_A PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN-- pdb|pdb|2nt1_A PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN-- . **.*: * : * tr|A9UD35|A9UD35_DELDE TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQKVKG----- tr|F5CB27|F5CB27_DELCA TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD------------- sp|Q2KHZ8|GLCM_BOVIN TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQKVKGFGGAM tr|D1L2S0|D1L2S0_BALPH TFSRFESTRSGRRMELSLGAIQANRTGTGLLLTLQPD------------- tr|F6WDY8|F6WDY8_HORSE TFSRYESTRSGRRMELSLGAIQANRTGTGLLLTLQPDQKFQKVKGFGGAM P04062 -FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG----- tr|F5H241|F5H241_HUMAN -FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG----- tr|B7Z6S9|B7Z6S9_HUMAN -FGLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG----- pdb|pdb|3gxi_A -FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG----- pdb|pdb|2nt1_A -FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG----- *. *. : :: * ::* : ..** : ..
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN TDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASCDFSIRTYTY tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE TDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASCDFSIRVYTY P04062 -------------------------------------------------- tr|F5H241|F5H241_HUMAN -------------------------------------------------- tr|B7Z6S9|B7Z6S9_HUMAN -------------------------------------------------- pdb|pdb|3gxi_A -------------------------------------------------- pdb|pdb|2nt1_A --------------------------------------------------
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN DDSPDDFQLLNFSLPEEDVKLKIPLIHQALELANRSVSLFASPWTSPTWL tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE ADTPDDFQLHNFSLPEEDVKLKIPLIHQALELSQRPISLFASPWTSPTWL P04062 -------------------------------------------------- tr|F5H241|F5H241_HUMAN -------------------------------------------------- tr|B7Z6S9|B7Z6S9_HUMAN -------------------------------------------------- pdb|pdb|3gxi_A -------------------------------------------------- pdb|pdb|2nt1_A --------------------------------------------------
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN KTNGAVNGKGTLKGQAGDLYHKTWARYFVKFLDAYAEHKLRFWAVTAENE tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE KTNGAVNGKGSLKGQPGDRYHQTWAKYFVKFLDAYAEHKLQFWAVTTENE P04062 ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE tr|F5H241|F5H241_HUMAN ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE tr|B7Z6S9|B7Z6S9_HUMAN ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE pdb|pdb|3gxi_A ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE pdb|pdb|2nt1_A ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN PTAGLLTGYPFQCLGFTPEHQRDFIARDLGPILANSTHRDVRLLMLDDQR tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE PSAGLISGYPFQCLGFTPEHQRDFIARDLGPTLANSTHRNVRVLMLDDQR P04062 PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR tr|F5H241|F5H241_HUMAN PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR tr|B7Z6S9|B7Z6S9_HUMAN PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR pdb|pdb|3gxi_A PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR pdb|pdb|2nt1_A PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN LLLPRWAQVVLADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE LLLPRWAQVVLADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPDMM P04062 LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM tr|F5H241|F5H241_HUMAN LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM tr|B7Z6S9|B7Z6S9_HUMAN LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM pdb|pdb|3gxi_A LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM pdb|pdb|2nt1_A LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN LFASEACVGSKFWEQSVRLGSWDRGMRYSHSIITNLLYHVVGWTDWNLAL tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE LFASEACVGSKFWEQSVRLGSWDRGVQYSHSIITNLLYHVAGWTDWNLAL P04062 LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL tr|F5H241|F5H241_HUMAN LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL tr|B7Z6S9|B7Z6S9_HUMAN LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL pdb|pdb|3gxi_A LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL pdb|pdb|2nt1_A LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN NPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKFIPEGSQRVG tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE NPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKFIPEGSQRVG P04062 NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG tr|F5H241|F5H241_HUMAN NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG tr|B7Z6S9|B7Z6S9_HUMAN NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG pdb|pdb|3gxi_A NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG pdb|pdb|2nt1_A NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN LVASKKSDLDTVALLRPDGSAVAVVLNRSSKDVPLTIKDPAVGFMETVSP tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE LDASEKTNLDTVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETVSP P04062 LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP tr|F5H241|F5H241_HUMAN LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP tr|B7Z6S9|B7Z6S9_HUMAN LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP pdb|pdb|3gxi_A LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP pdb|pdb|2nt1_A LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP
tr|A9UD35|A9UD35_DELDE ------------ tr|F5CB27|F5CB27_DELCA ------------ sp|Q2KHZ8|GLCM_BOVIN GYSIHTYLWRRQ tr|D1L2S0|D1L2S0_BALPH ------------ tr|F6WDY8|F6WDY8_HORSE GYSIHTYLWRRQ P04062 GYSIHTYLWRRQ tr|F5H241|F5H241_HUMAN GYSIHTYLWRRQ tr|B7Z6S9|B7Z6S9_HUMAN GYSIHTYLWRRQ pdb|pdb|3gxi_A GYSIHTYLWHRQ pdb|pdb|2nt1_A GYSIHTYLWHRQ