Difference between revisions of "Multiple Sequence Alignment: ClustalW - set 1"
From Bioinformatikpedia
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pdb|pdb|2nt1_A ------------ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFS |
pdb|pdb|2nt1_A ------------ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFS |
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| + | |||
| − | |||
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- |
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- |
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tr|F5CB27|F5CB27_DELCA -------------------------------------------------- |
tr|F5CB27|F5CB27_DELCA -------------------------------------------------- |
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| Line 37: | Line 37: | ||
pdb|pdb|2nt1_A RYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDA |
pdb|pdb|2nt1_A RYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDA |
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| + | |||
| − | |||
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- |
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- |
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tr|F5CB27|F5CB27_DELCA -------------------------------------------------- |
tr|F5CB27|F5CB27_DELCA -------------------------------------------------- |
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| Line 49: | Line 49: | ||
pdb|pdb|2nt1_A AALN---------------------------------------------- |
pdb|pdb|2nt1_A AALN---------------------------------------------- |
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| + | |||
| − | |||
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- |
tr|A9UD35|A9UD35_DELDE -------------------------------------------------- |
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tr|F5CB27|F5CB27_DELCA -------------------------------------------------- |
tr|F5CB27|F5CB27_DELCA -------------------------------------------------- |
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pdb|pdb|2nt1_A --------------------------------------------ILALSP |
pdb|pdb|2nt1_A --------------------------------------------ILALSP |
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| + | |||
| − | |||
| − | tr|A9UD35|A9UD35_DELDE --------------------------------CNATYCDSLDPLTLPDPG |
+ | tr|A9UD35|A9UD35_DELDE --------------------------------<span style="color:#0000FF">CNATYCDSLDPLTLPDPG |
tr|F5CB27|F5CB27_DELCA --------------------------------CNATYCDSLDPLTLPDPG |
tr|F5CB27|F5CB27_DELCA --------------------------------CNATYCDSLDPLTLPDPG |
||
sp|Q2KHZ8|GLCM_BOVIN --------------GARPCSPKSFGYSSVVCVCNGTYCDSLDPLTLPDPG |
sp|Q2KHZ8|GLCM_BOVIN --------------GARPCSPKSFGYSSVVCVCNGTYCDSLDPLTLPDPG |
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| Line 73: | Line 73: | ||
pdb|pdb|2nt1_A PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN-- |
pdb|pdb|2nt1_A PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN-- |
||
. **.*: * : * |
. **.*: * : * |
||
| + | |||
| − | |||
| − | tr|A9UD35|A9UD35_DELDE |
+ | tr|A9UD35|A9UD35_DELDE TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD</span>QKFQKVKG----- |
tr|F5CB27|F5CB27_DELCA TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD------------- |
tr|F5CB27|F5CB27_DELCA TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD------------- |
||
sp|Q2KHZ8|GLCM_BOVIN TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQKVKGFGGAM |
sp|Q2KHZ8|GLCM_BOVIN TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQKVKGFGGAM |
||
Revision as of 00:17, 6 May 2013
CLUSTAL 2.1 multiple sequence alignment
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE --------------------------------------------------
P04062 --------------------------------------------------
tr|F5H241|F5H241_HUMAN --------------------------------------------------
tr|B7Z6S9|B7Z6S9_HUMAN MSDRLFSNPGPAPTPQGCFSRGCGWSGCILPSESYCAGPQSPVPPRRLCR
pdb|pdb|3gxi_A --------------------------------------------------
pdb|pdb|2nt1_A --------------------------------------------------
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN -----------------------------------MELSSP--------S
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE -----------------------------------MELSSP--------S
P04062 -----------------------------------MEFSSP--------S
tr|F5H241|F5H241_HUMAN -----------------------------------MEFSSP--------S
tr|B7Z6S9|B7Z6S9_HUMAN LRWDFVLPPVGAAVSLRRRDSGTPVVFSSSNDPEGMEFSSP--------S
pdb|pdb|3gxi_A ------------ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFS
pdb|pdb|2nt1_A ------------ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFS
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN REEYPMPRGRVGIMAASLMG-------LLLLHTVSWVS------------
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE REGCLKCPGRVGIMAASFMG-------LLLLQAVSRAS------------
P04062 REECPKPLSRVSIMAGSLTG-------LLLLQ-------------AVSWA
tr|F5H241|F5H241_HUMAN REECPKPLSRVSIMAGSLTG-------LLLLQ-------------AVSWA
tr|B7Z6S9|B7Z6S9_HUMAN REECPKPLSRVSIMAGSLTG-------LLLLQ-------------AVSWA
pdb|pdb|3gxi_A RYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDA
pdb|pdb|2nt1_A RYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDA
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE --------------------------------------------------
P04062 SGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRR
tr|F5H241|F5H241_HUMAN S-------------------------------------------------
tr|B7Z6S9|B7Z6S9_HUMAN SGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRR
pdb|pdb|3gxi_A AALN----------------------------------------------
pdb|pdb|2nt1_A AALN----------------------------------------------
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN --------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE --------------------------------------------------
P04062 MELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSP
tr|F5H241|F5H241_HUMAN --------------------------------------------------
tr|B7Z6S9|B7Z6S9_HUMAN MELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSP
pdb|pdb|3gxi_A --------------------------------------------ILALSP
pdb|pdb|2nt1_A --------------------------------------------ILALSP
tr|A9UD35|A9UD35_DELDE --------------------------------CNATYCDSLDPLTLPDPG
tr|F5CB27|F5CB27_DELCA --------------------------------CNATYCDSLDPLTLPDPG
sp|Q2KHZ8|GLCM_BOVIN --------------GARPCSPKSFGYSSVVCVCNGTYCDSLDPLTLPDPG
tr|D1L2S0|D1L2S0_BALPH ----------------------------VVCVCNATYCDSLDPLTLPDPG
tr|F6WDY8|F6WDY8_HORSE --------------GARPCSPKSFGYSSVVCVCNATYCDSLDPLTLPAPG
P04062 PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN--
tr|F5H241|F5H241_HUMAN --------------GIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN--
tr|B7Z6S9|B7Z6S9_HUMAN PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN--
pdb|pdb|3gxi_A PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN--
pdb|pdb|2nt1_A PAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHN--
. **.*: * : *
tr|A9UD35|A9UD35_DELDE TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQKVKG-----
tr|F5CB27|F5CB27_DELCA TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD-------------
sp|Q2KHZ8|GLCM_BOVIN TFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQKVKGFGGAM
tr|D1L2S0|D1L2S0_BALPH TFSRFESTRSGRRMELSLGAIQANRTGTGLLLTLQPD-------------
tr|F6WDY8|F6WDY8_HORSE TFSRYESTRSGRRMELSLGAIQANRTGTGLLLTLQPDQKFQKVKGFGGAM
P04062 -FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG-----
tr|F5H241|F5H241_HUMAN -FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG-----
tr|B7Z6S9|B7Z6S9_HUMAN -FGLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG-----
pdb|pdb|3gxi_A -FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG-----
pdb|pdb|2nt1_A -FSLPEED-TKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNG-----
*. *. : :: * ::* : ..** : ..
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN TDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASCDFSIRTYTY
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE TDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASCDFSIRVYTY
P04062 --------------------------------------------------
tr|F5H241|F5H241_HUMAN --------------------------------------------------
tr|B7Z6S9|B7Z6S9_HUMAN --------------------------------------------------
pdb|pdb|3gxi_A --------------------------------------------------
pdb|pdb|2nt1_A --------------------------------------------------
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN DDSPDDFQLLNFSLPEEDVKLKIPLIHQALELANRSVSLFASPWTSPTWL
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE ADTPDDFQLHNFSLPEEDVKLKIPLIHQALELSQRPISLFASPWTSPTWL
P04062 --------------------------------------------------
tr|F5H241|F5H241_HUMAN --------------------------------------------------
tr|B7Z6S9|B7Z6S9_HUMAN --------------------------------------------------
pdb|pdb|3gxi_A --------------------------------------------------
pdb|pdb|2nt1_A --------------------------------------------------
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN KTNGAVNGKGTLKGQAGDLYHKTWARYFVKFLDAYAEHKLRFWAVTAENE
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE KTNGAVNGKGSLKGQPGDRYHQTWAKYFVKFLDAYAEHKLQFWAVTTENE
P04062 ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE
tr|F5H241|F5H241_HUMAN ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE
tr|B7Z6S9|B7Z6S9_HUMAN ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE
pdb|pdb|3gxi_A ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE
pdb|pdb|2nt1_A ----AVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENE
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN PTAGLLTGYPFQCLGFTPEHQRDFIARDLGPILANSTHRDVRLLMLDDQR
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE PSAGLISGYPFQCLGFTPEHQRDFIARDLGPTLANSTHRNVRVLMLDDQR
P04062 PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
tr|F5H241|F5H241_HUMAN PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
tr|B7Z6S9|B7Z6S9_HUMAN PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
pdb|pdb|3gxi_A PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
pdb|pdb|2nt1_A PSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN LLLPRWAQVVLADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE LLLPRWAQVVLADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPDMM
P04062 LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM
tr|F5H241|F5H241_HUMAN LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM
tr|B7Z6S9|B7Z6S9_HUMAN LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM
pdb|pdb|3gxi_A LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM
pdb|pdb|2nt1_A LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTM
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN LFASEACVGSKFWEQSVRLGSWDRGMRYSHSIITNLLYHVVGWTDWNLAL
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE LFASEACVGSKFWEQSVRLGSWDRGVQYSHSIITNLLYHVAGWTDWNLAL
P04062 LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL
tr|F5H241|F5H241_HUMAN LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL
tr|B7Z6S9|B7Z6S9_HUMAN LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL
pdb|pdb|3gxi_A LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL
pdb|pdb|2nt1_A LFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLAL
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN NPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKFIPEGSQRVG
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE NPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKFIPEGSQRVG
P04062 NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG
tr|F5H241|F5H241_HUMAN NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG
tr|B7Z6S9|B7Z6S9_HUMAN NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG
pdb|pdb|3gxi_A NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG
pdb|pdb|2nt1_A NPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVG
tr|A9UD35|A9UD35_DELDE --------------------------------------------------
tr|F5CB27|F5CB27_DELCA --------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN LVASKKSDLDTVALLRPDGSAVAVVLNRSSKDVPLTIKDPAVGFMETVSP
tr|D1L2S0|D1L2S0_BALPH --------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE LDASEKTNLDTVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETVSP
P04062 LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP
tr|F5H241|F5H241_HUMAN LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP
tr|B7Z6S9|B7Z6S9_HUMAN LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP
pdb|pdb|3gxi_A LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP
pdb|pdb|2nt1_A LVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISP
tr|A9UD35|A9UD35_DELDE ------------ tr|F5CB27|F5CB27_DELCA ------------ sp|Q2KHZ8|GLCM_BOVIN GYSIHTYLWRRQ tr|D1L2S0|D1L2S0_BALPH ------------ tr|F6WDY8|F6WDY8_HORSE GYSIHTYLWRRQ P04062 GYSIHTYLWRRQ tr|F5H241|F5H241_HUMAN GYSIHTYLWRRQ tr|B7Z6S9|B7Z6S9_HUMAN GYSIHTYLWRRQ pdb|pdb|3gxi_A GYSIHTYLWHRQ pdb|pdb|2nt1_A GYSIHTYLWHRQ
