Difference between revisions of "Labjournal NMA-Hemochromatosis"

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(Created page with " == WebNM@ mode movies with pymol == reinitialize load ./1A6ZA.pdb, 1A6ZA load ./modes_visualization/1a6zA.mode7.xyz, Mode7 load_traj ./modes_visualization/1a6zA.mode7.dcd, Mod…")
 
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== WebNM@ mode movies with pymol ==
 
== WebNM@ mode movies with pymol ==
   
  +
<source lang="python">
 
 
reinitialize
 
reinitialize
 
load ./1A6ZA.pdb, 1A6ZA
 
load ./1A6ZA.pdb, 1A6ZA
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mpng movies/movie$i/mode$i
 
mpng movies/movie$i/mode$i
 
hide everything, Mode$i
 
hide everything, Mode$i
  +
</source>
 
   
 
convert -delay 10 -loop 0 mode*.png mode$i.gif
 
convert -delay 10 -loop 0 mode*.png mode$i.gif

Revision as of 12:48, 11 August 2013

WebNM@ mode movies with pymol

<source lang="python"> reinitialize load ./1A6ZA.pdb, 1A6ZA load ./modes_visualization/1a6zA.mode7.xyz, Mode7 load_traj ./modes_visualization/1a6zA.mode7.dcd, Mode7

hide everything, all show cartoon, 1a6zA show ribbon, Mode7


color green, 1a6zA color red, Mode7

mset 2 -10 -2 set ray_trace_frames, 1 set cache_frames=0 mclear set cartoon_transparency, 0.4


load modes_visualization/1A6Z.mode$i.xyz, Mode$i load_traj ./modes_visualization/1A6Z.mode$i.dcd, Mode$i hide everything, Mode$i show ribbon, Mode$i color red, Mode$i mclear mpng movies/movie$i/mode$i hide everything, Mode$i </source>

convert -delay 10 -loop 0 mode*.png mode$i.gif