Difference between revisions of "Lab Journal Task 3 Hemo"

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== Secondary Structure Predictions ==
 
== Secondary Structure Predictions ==
  +
  +
=== Output unification ==
  +
DSSP, reprof and psipred all have different output types. In order to compare the results, the following mappings were performed
  +
  +
;reprof
  +
:H helix
  +
:E extended
  +
:L loop -> C
  +
  +
  +
  +
;DSSP
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:H = alpha helix -> H
  +
:B = residue in isolated beta-bridge -> C
  +
:E = extended strand, participates in beta ladder -> E
  +
:G = 3-helix (3/10 helix) -> H
  +
:I = 5 helix (pi helix) -> C
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:T = hydrogen bonded turn - C
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:S = bend -> C
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  +
  +
psipred:
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:H helix
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:E sheet
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:C disordered
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== Disorder Prediction ==
 
== Disorder Prediction ==

Revision as of 16:08, 30 August 2013

Secondary Structure Predictions

= Output unification

DSSP, reprof and psipred all have different output types. In order to compare the results, the following mappings were performed

reprof
H helix
E extended
L loop -> C


DSSP
H = alpha helix -> H
B = residue in isolated beta-bridge -> C
E = extended strand, participates in beta ladder -> E
G = 3-helix (3/10 helix) -> H
I = 5 helix (pi helix) -> C
T = hydrogen bonded turn - C
S = bend -> C


psipred:

H helix
E sheet
C disordered


Disorder Prediction

Transmembrane Helix Prediction

Signal Peptides

signalP server Version 4.1

  • Organism: Eukaryote
  • D-cutoff values: default
  • Input may include TM-helices: yes
  • Restrictions: None

GO Terms