Difference between revisions of "Lab Journal - Task 6 (PAH)"
From Bioinformatikpedia
(→Calculate and analyze correlated mutations) |
(→Calculate and analyze correlated mutations) |
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extract_pairs.pl extracts all residue pairs with distance >5. |
extract_pairs.pl extracts all residue pairs with distance >5. |
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+ | sort -k 6 -g -r PF00071_extract.evfold >sort_PF00071_extract.txt |
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== Calculate structural model == |
== Calculate structural model == |
Revision as of 19:04, 12 June 2013
Multiple Sequence Alignment
...
/usr/share/freecontact/a2m2aln -q '^RASH_HUMAN/(\d+)' --quiet < PF00071_full.txt > PF00071.aln
/usr/share/freecontact/a2m2aln -q '^PH4H_HUMAN/(\d+)' --quiet < PF00351_full.txt > PF00351.aln
freecontact -o evfold < 'PF00071.aln' > PF00071.evfold
extract_pairs.pl extracts all residue pairs with distance >5.
sort -k 6 -g -r PF00071_extract.evfold >sort_PF00071_extract.txt
Calculate structural model
...