Difference between revisions of "Lab Journal - Task 6 (PAH)"

From Bioinformatikpedia
(Calculate and analyze correlated mutations)
(Calculate and analyze correlated mutations)
Line 9: Line 9:
   
 
extract_pairs.pl extracts all residue pairs with distance >5.
 
extract_pairs.pl extracts all residue pairs with distance >5.
  +
  +
sort -k 6 -g -r PF00071_extract.evfold >sort_PF00071_extract.txt
   
 
== Calculate structural model ==
 
== Calculate structural model ==

Revision as of 19:04, 12 June 2013

Multiple Sequence Alignment

...

/usr/share/freecontact/a2m2aln -q '^RASH_HUMAN/(\d+)' --quiet < PF00071_full.txt > PF00071.aln 
/usr/share/freecontact/a2m2aln -q '^PH4H_HUMAN/(\d+)' --quiet < PF00351_full.txt > PF00351.aln

Calculate and analyze correlated mutations

freecontact -o evfold < 'PF00071.aln' > PF00071.evfold

extract_pairs.pl extracts all residue pairs with distance >5.

sort -k 6 -g -r PF00071_extract.evfold >sort_PF00071_extract.txt

Calculate structural model

...