Difference between revisions of "Lab Journal - Task 6 (PAH)"

From Bioinformatikpedia
(Multiple Sequence Alignment)
(Calculate and analyze correlated mutations)
Line 6: Line 6:
   
 
== Calculate and analyze correlated mutations ==
 
== Calculate and analyze correlated mutations ==
  +
freecontact -o evfold < 'PF00071.aln' > PF00071.evfold
...
 
  +
  +
extract_pairs.pl extracts all residue pairs with distance >5.
   
 
== Calculate structural model ==
 
== Calculate structural model ==

Revision as of 18:22, 12 June 2013

Multiple Sequence Alignment

...

/usr/share/freecontact/a2m2aln -q '^RASH_HUMAN/(\d+)' --quiet < PF00071_full.txt > PF00071.aln 
/usr/share/freecontact/a2m2aln -q '^PH4H_HUMAN/(\d+)' --quiet < PF00351_full.txt > PF00351.aln

Calculate and analyze correlated mutations

freecontact -o evfold < 'PF00071.aln' > PF00071.evfold

extract_pairs.pl extracts all residue pairs with distance >5.

Calculate structural model

...