# Difference between revisions of "Lab Journal - Task 5 (PAH)"

From Bioinformatikpedia

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=== Modeller === |
=== Modeller === |
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To use Modeller we follow the [https://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Using_Modeller_for_TASK_4 tutorial] written by the students 2011. |
To use Modeller we follow the [https://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Using_Modeller_for_TASK_4 tutorial] written by the students 2011. |
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− | *First the target sequence must be provided into PIR-format (2pah has one Lysine at the end and therefore is one aa longer than P00439): |
+ | *First the target sequence must be provided into PIR-format (2pah has one Lysine at the end and therefore is one aa longer than P00439???): |

<code> |
<code> |
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>P1;2pah<br> |
>P1;2pah<br> |

## Revision as of 11:44, 5 June 2013

## Model calculation

### Modeller

To use Modeller we follow the tutorial written by the students 2011.

- First the target sequence must be provided into PIR-format (2pah has one Lysine at the end and therefore is one aa longer than P00439???):

```
>P1;2pah
```

sequence:2pah:::::::0.00: 0.00

MSTAVLENPGLGRKLSDFGQETSYIEDNCNQNGAISLIFSLKEEVGALAKVLRLFEENDV

NLTHIESRPSRLKKDEYEFFTHLDKRSLPALTNIIKILRHDIGATVHELSRDKKKDTVPW

FPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYM

EEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGF

RLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFA

QFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSE

KPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQR

IEVLDNTQQLKILADSINSEIGILCSALQKIK*