Difference between revisions of "Homology Modelling GLA"

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Revision as of 21:45, 9 June 2011

by Benjamin Drexler and Fabian Grandke

Calculation of Models

Available Homologous Structures

The HHpred search from Task1 output the following sequences(Top 10):

PDB-ID Name Probability E-value P-value Identity
> 60% sequence identity
3hg3_A Alpha-galactosidase A 1.0 0 0 97%
> 40% sequence identity
1ktb_A Alpha-N-acetylgalactosaminidase 1.0 0 0 53%
< 40% sequence identity
1uas_A Alpha-galactosidase 1.0 0 0 39%
3lrk_A Alpha-galactosidase 1 1.0 0 0 32%
3a5v_A Alpha-galactosidase 1.0 0 0 35%
1szn_A Alpha-galactosidase 1.0 0 0 34%
3a21_A Putative secreted alpha-galactosidase 1.0 0 0 34%
3cc1_A BH1870 protein 1.0 0 0 26%
3a24_A Alpha-galactosidase 1.0 0 0 14%
1zy9_A Alpha-galactosidase 1.0 2.2E-37 8.8E-42 14%


MODELLER

iTasser

SWISS-MODEL

Following sequences have been selected:

3hg3_A 1ktb_A 3cc1_A
Automated Mode Aligned Mode Automated Mode Aligned Mode Automated Mode Aligned Mode
Identity Z-score Model Z-score Model Identity Z-score Model Z-score Model Identity Z-score Model Z-score Model
97% 0 0 53% 0 0 26% 0 Error¹ NA

Evaluation of Models

MODELLER

Numeric Evaluation

Comparison to Experimental Structure

iTasser

Numeric Evaluation

Comparison to Experimental Structure

SWISS-MODEL

Numeric Evaluation

Comparison to Experimental Structure

References

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