Difference between revisions of "Homology Based Structure Predictions Hemochromatosis Alignments"
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== Modeller == |
== Modeller == |
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+ | === 1K5NA === |
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+ | ==== simple modeller alignment ==== |
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+ | |||
+ | >P1;1K5N |
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+ | structureX:1K5N: 1 :A:+276 :A:MOL_ID 1; MOLECULE MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-B*2 CHAIN A; FRAGMENT HLA-B*2709 HEAVY CHAIN, EXTRACELLULAR DOMAIN; SYNONYM LYMPHOCYTE ANTIGEN HLA-B27; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN, LIGHT CHAIN; CHAIN B; ENGINEERED YES; MOL_ID 3; MOLECULE NONAMERIC MODEL PEPTIDE M9; CHAIN C; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE HLA-B OR HLAB; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 3; SYNTHETIC YES; OTHER_DETAILS THIS PEPTIDE WAS CHEMICALLY SYNTHESISED.: 1.09: 0.12 |
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+ | -------------------------GSHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAP |
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+ | WIEQE-GPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQHAYDGKDYI |
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+ | ALNEDLSSWTAADTAAQITQRKWEAARV-AEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE |
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+ | ATLRCWALGFYPAEITLTWQRDGED-QTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL |
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+ | RWEP-------------------------------------------------* |
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+ | >P1;Q30201 |
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+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
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+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHE--SRRVEPRTP |
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+ | WVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKE-SHTLQVILGCEMQEDNST-EGYWKYGYDGQDHL |
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+ | EFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHH-VTSSV |
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+ | TTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIV |
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+ | IWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
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+ | |||
+ | |||
+ | ==== 2d modeller alignment ==== |
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+ | |||
+ | >P1;1K5N |
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+ | structureX:1K5N: 1 :A:+276 :A:MOL_ID 1; MOLECULE MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-B*2 CHAIN A; FRAGMENT HLA-B*2709 HEAVY CHAIN, EXTRACELLULAR DOMAIN; SYNONYM LYMPHOCYTE ANTIGEN HLA-B27; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN, LIGHT CHAIN; CHAIN B; ENGINEERED YES; MOL_ID 3; MOLECULE NONAMERIC MODEL PEPTIDE M9; CHAIN C; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE HLA-B OR HLAB; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 3; SYNTHETIC YES; OTHER_DETAILS THIS PEPTIDE WAS CHEMICALLY SYNTHESISED.: 1.09: 0.12 |
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+ | -G------------------------SHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAP |
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+ | WIE-QEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQHAYDGKDYI |
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+ | ALNEDLSSWTAADTAAQITQRKWEAARV-AEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE |
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+ | ATLRCWALGFYPAEITLTWQRDGEDQT-QDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL |
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+ | RWEP-------------------------------------------------* |
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+ | >P1;Q30201 |
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+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
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+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYD--HESRRVEPRTP |
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+ | WVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSK-ESHTLQVILGCEMQEDNS-TEGYWKYGYDGQDHL |
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+ | EFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSS-V |
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+ | TTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIV |
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+ | IWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
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+ | |||
+ | === 1ZS8A === |
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+ | ==== simple modeller alignment ==== |
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+ | |||
+ | >P1;1ZS8 |
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+ | structureX:1ZS8: 1 :A:+261 :A:MOL_ID 1; MOLECULE HISTOCOMPATIBILITY 2, M REGION LOCUS 10.5; CHAIN A, C, E, G, I; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B, D, F, H, J; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; GENE M10.5; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31: 3.00: 0.31 |
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+ | --------------------------SHWLKTFRIVIMEPGILEPRFIQVSYVDSIQYQGFDSRSG-MQPRAAWM |
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+ | KQEPPEYWKNETEHAMGASLLARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFLGGHYGLTYYGYDYIILN |
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+ | EDLNSWTTEGKVG-------GKFNSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPRTHVTHKVT---VTLR |
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+ | CWALGFYPADITLTWKRDGKN-HTQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCHVHHEGLPGPLTLKWG- |
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+ | -------------------------------------------------* |
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+ | >P1;Q30201 |
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+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
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+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
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+ | SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNS-TEGYWKYGYDGQDHLEFC |
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+ | PDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLR |
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+ | CRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP |
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+ | SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
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+ | |||
+ | |||
+ | ==== 2d modeller alignment ==== |
||
+ | |||
+ | >P1;1ZS8 |
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+ | structureX:1ZS8: 1 :A:+261 :A:MOL_ID 1; MOLECULE HISTOCOMPATIBILITY 2, M REGION LOCUS 10.5; CHAIN A, C, E, G, I; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B, D, F, H, J; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; GENE M10.5; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31: 3.00: 0.31 |
||
+ | --------SHWLKTFRIVIMEPGIL-------------E-----PRFIQVSYVDSIQYQGFDSRS-GMQPRAAWM |
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+ | KQE-PPEYWKNETEHAMGASLLARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFLGGHYGLTYYGYDYIIL |
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+ | NEDLNSWTTEG------KVG-GKFNSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPRTHVTHKVT---VTL |
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+ | RCWALGFYPADITLTWKRDGKN-HTQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCHVHHEGLPGPL----- |
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+ | -----TLKWG----------------------------------------* |
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+ | >P1;Q30201 |
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+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
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+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
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+ | SSRISSQMWLQLSQSLKGWDHMFTVDF-WTIMENHNHSKESHTLQVILGCEMQEDNS-TEGYWKYGYDGQDHLEF |
||
+ | CPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTL |
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+ | RCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWE |
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+ | PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
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+ | |||
+ | |||
+ | === 2IADB === |
||
+ | ==== simple modeller alignment ==== |
||
+ | |||
+ | >P1;2IAD |
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+ | structureX:2IAD: 2S:B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 |
||
+ | ---------------GHATQGVTAASSHERHFVVQFKGE-------------------CYYTNGTQRIRLVT--- |
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+ | -------------------------------------------------------------RYIYNREEYVRYDS |
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+ | DVGEYRAVTELGRPDAEYWNSQPEILERTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHNTLV |
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+ | CSVTDFYPAKIKVRWFRNGQE-ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKSPITVEWSS |
||
+ | -------------------------------------------------* |
||
+ | >P1;Q30201 |
||
+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
||
+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
||
+ | SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP |
||
+ | DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQL-LELGRGVLDQQVPPLVKVTHHVTSSVTTLR |
||
+ | CRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP |
||
+ | SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
||
+ | |||
+ | ==== 2d modeller alignment ==== |
||
+ | |||
+ | >P1;2IAD |
||
+ | structureX:2IAD: 2S:B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 |
||
+ | -G-HATQGV-------TAA------SSHERH--F---------VVQFKGECYYTN--------GTQRIRLVTRYI |
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+ | YNR---EEYVRYDSDV-G-------EYRAVTE--------------LG------RPDAEYWNSQ----------P |
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+ | EILERTRAEVD---T---ACRHNYEGPETSTSLRR--LEQPNVAISLSR------TEAL---NHH-----NTLVC |
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+ | SVTDFYPAKIKVRWFRNGQE-ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKSPITVEW--S |
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+ | -S----------------------------------------------* |
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+ | |||
+ | >P1;Q30201 |
||
+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
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+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
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+ | SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP |
||
+ | DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRC |
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+ | RALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS |
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+ | PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
||
+ | |||
+ | === 3DBXA === |
||
+ | ==== simple modeller alignment ==== |
||
+ | |||
+ | >P1;3DBX |
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+ | structureX:3DBX: 7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 |
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+ | PEESQFFQLFYTLLLGNV------------------SSTELTGMAL------LADVPIMVLDPHTWNLNICRPWV |
||
+ | QE-ITAETEVKKILSFSMVGIRNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYEL |
||
+ | SRERWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLL |
||
+ | LVCRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLLV |
||
+ | PW-------------------------------------------------HH* |
||
+ | >P1;Q30201 |
||
+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
||
+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
||
+ | SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP |
||
+ | DTLDWRAAEPRAWPTKLEWERHKIRARQN--RAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTL |
||
+ | R-CRALNYYPQNITMKWLKDKQPMDAK-EFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL-DQPLIV |
||
+ | IWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
||
+ | |||
+ | ==== 2d modeller alignment ==== |
||
+ | |||
+ | >P1;3DBX |
||
+ | structureX:3DBX: 7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 |
||
+ | ------PEESQFFQLFYTLLLGNV--S----------STELTGMALLA-----DVPIMVLDPH-TWNLNICRPWV |
||
+ | Q-EITAETEVKKILSFSMVGIRNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYEL |
||
+ | SRERWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLL |
||
+ | LVCRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLLV |
||
+ | PWH------------------------------------------H------- |
||
+ | >P1;Q30201 |
||
+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
||
+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
||
+ | SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP |
||
+ | DTLDWRAAEPRAWPTKLEWERHKIRARQN--RAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSV-TT |
||
+ | LRCRALNYYPQNITMKWLKDKQPMD-AKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL-DQPLIV |
||
+ | IWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
||
+ | |||
+ | === MSA1 === |
||
+ | |||
+ | >P1;1K5NA |
||
+ | structureX:1K5N:1 :A:+276 :A:MOL_ID 1; MOLECULE MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-B*2 CHAIN A; FRAGMENT HLA-B*2709 HEAVY CHAIN, EXTRACELLULAR DOMAIN; SYNONYM LYMPHOCYTE ANTIGEN HLA-B27; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN, LIGHT CHAIN; CHAIN B; ENGINEERED YES; MOL_ID 3; MOLECULE NONAMERIC MODEL PEPTIDE M9; CHAIN C; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE HLA-B OR HLAB; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 3; SYNTHETIC YES; OTHER_DETAILS THIS PEPTIDE WAS CHEMICALLY SYNTHESISED.: 1.09: 0.12 |
||
+ | GSHSMRYFHTSVSRPGRGE-----------------------PRFITVGYVDDTLFVRFDSDAASPREEPRAPWI |
||
+ | EQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQHAYDGKDYIALN |
||
+ | EDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLR |
||
+ | CWALGFYPAEITLTWQRDGEDQ--TQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL-PKPLT--- |
||
+ | ---------------------------------------------LRWEP* |
||
+ | >P1;1ZS8A |
||
+ | structureX:1ZS8:1 :A:+261 :A:MOL_ID 1; MOLECULE HISTOCOMPATIBILITY 2, M REGION LOCUS 10.5; CHAIN A, C, E, G, I; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B, D, F, H, J; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; GENE M10.5; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31: 3.00: 0.31 |
||
+ | -SHWLKTFRIVIMEPGILE-----------------------PRFIQVSYVDSIQYQGFDSRSGM---QPRAAWM |
||
+ | KQEPPEYWKNETEHAMGASLLARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFLGGHYGLTYYGYDYIILN |
||
+ | EDLNSWTTEGKVGG------KFNSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPRTHVTHKV----TVTLR |
||
+ | CWALGFYPADITLTWKRDGKNH--TQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCHVHHEGL-PGPLT--- |
||
+ | ---------------------------------------------LKWG-* |
||
+ | >P1;2IADB |
||
+ | structureX:2IAD:2S :B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 |
||
+ | GHATQGVTAASSHERHFVV-----------------------QFKGECYYTNGTQRIRLVTRYIY---------- |
||
+ | NREEYVRYDSDVGEYRAVTELGRPDAEYWNSQ------------------------------------------- |
||
+ | ----------------------PEILERTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHNTLV |
||
+ | CSVTDFYPAKIKVRWFRNGQEE--TVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSL-KSPIT--- |
||
+ | ---------------------------------------------VEWSS* |
||
+ | >P1;3DBXA |
||
+ | structureX:3DBX:7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 |
||
+ | PEESQFFQLFYTLLLGNVS-----------------------STELTGMALLADVPIMVLDPHTWNLNICRPWVQ |
||
+ | EITAETEVKKILSFSMVGIRNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYELSR |
||
+ | ERWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLLLV |
||
+ | CRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLL--- |
||
+ | ---------------------------------------------VPWHH* |
||
+ | >P1;Q30201 |
||
+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
||
+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
||
+ | SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP |
||
+ | DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVT-TLR |
||
+ | CRALNYYPQNITMKWLKDKQPMD-AKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWE |
||
+ | PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
||
+ | |||
+ | === MSA2 === |
||
+ | |||
+ | >P1;1ZS8A |
||
+ | structureX:1ZS8:1 :A:+261 :A:MOL_ID 1; MOLECULE HISTOCOMPATIBILITY 2, M REGION LOCUS 10.5; CHAIN A, C, E, G, I; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B, D, F, H, J; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; GENE M10.5; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31: 3.00: 0.31 |
||
+ | SHWLKTFRI--VIMEPGILEPRFIQVSYVDSIQYQGFDSRSGMQPRAAWMK----QEPPEYWKNETEHAMGASLL |
||
+ | ARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFL-------------------------GGHYGLTYYGYDY |
||
+ | IILNEDLNSWTTEGKVGGKFNSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPRTHV-----THKVTVTLRC |
||
+ | WALGFYPADITLTWKRDGKN--HTQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCHVHHEGLPG-PLT---- |
||
+ | --------------------------------------------LKWG-* |
||
+ | >P1;2IADB |
||
+ | structureX:2IAD:2S :B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 |
||
+ | GHATQG-------VTAASSHERHFVVQFKGECYYTNGTQRIRLVTRYIYNR----EEYVRYDSDVGEYRAVTEL- |
||
+ | ---------------------------------------------------------------GRPDAEYWNSQP |
||
+ | EILERTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHN----------------------TLVC |
||
+ | SVTDFYPAKIKVRWFRNGQE--ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKS-PIT---- |
||
+ | --------------------------------------------VEWSS* |
||
+ | >P1;3DBXA |
||
+ | structureX:3DBX:7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 |
||
+ | PEESQFFQLFYTLLLGNVSSTELTGMALLADVPIMVLDPHTWNLNICRPWV----QEITAETEVKKILSFSMVGI |
||
+ | RNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRW------------------SFVNIGEGGRDLVTYELSRE |
||
+ | RWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLLLVC |
||
+ | RVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLL---- |
||
+ | --------------------------------------------VPWHH* |
||
+ | >P1;Q30201 |
||
+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
||
+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
||
+ | SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP |
||
+ | DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRC |
||
+ | RALNYYPQNITMKWLKDKQPM-DAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP |
||
+ | SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
||
+ | |||
+ | === MSA3 === |
||
+ | |||
+ | >P1;2IADB |
||
+ | structureX:2IAD:2S :B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 |
||
+ | GHATQGVTAASSHERHFVV-------------QFKGECYYTNGTQRIRLVTRYIYNREEYVRYDSDVGEYRAVTE |
||
+ | LGRPDAEYWN------------------------------------SQPEILERTRAEVDTACRHNYE------- |
||
+ | --GPETSTSLRRLEQPNVAISLSRTEALNH---------------------------------------HNTLVC |
||
+ | SVTDFYPAKIKVRWFRNGQE--ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKS-PITV--- |
||
+ | ---------------------------------------------EWSS* |
||
+ | >P1;3DBXA |
||
+ | structureX:3DBX:7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 |
||
+ | PEESQFFQLFYTLLLGNVS-------------STELTGMALLADVPIMVLDPHTWNLNICRPWVQEITAETEVKK |
||
+ | ILSFSMVGIRNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYELSRERW------- |
||
+ | --VPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLLLVC |
||
+ | RVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLLV--- |
||
+ | ---------------------------------------------PWHH* |
||
+ | >P1;Q30201 |
||
+ | sequence:Q30201: : : : ::: 0.00: 0.00 |
||
+ | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV |
||
+ | SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP |
||
+ | DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRC |
||
+ | RALNYYPQNITMKWLKDKQPM-DAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP |
||
+ | SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE* |
||
<br style="clear:both;"> |
<br style="clear:both;"> |
||
Line 17: | Line 253: | ||
− | TARGET 47 TPWVSSRISS QMWLQLSQSL KGWDHMFTVD |
+ | TARGET 47 TPWVSSRISS QMWLQLSQSL KGWDHMFTVD FWTIMENH<font color=red>N</font>H S-KESHTLQV |
1k5nA 49 apwie-qegp eywdretqic kakaqtdred lrtllryynq seagshtlqn |
1k5nA 49 apwie-qegp eywdretqic kakaqtdred lrtllryynq seagshtlqn |
||
Line 24: | Line 260: | ||
− | TARGET 96 |
+ | TARGET 96 ILG<font color=red>C</font>EMQED<font color=red>N</font> S-TEGYWKYG YDGQDHLEFC PDTLDWRAAE PRAWPTKLEW |
1k5nA 98 mygcdvgpdg rllrgyhqha ydgkdyialn edlsswtaad taaqitqrkw |
1k5nA 98 mygcdvgpdg rllrgyhqha ydgkdyialn edlsswtaad taaqitqrkw |
||
Line 31: | Line 267: | ||
− | TARGET 145 ERHKIRARQN |
+ | TARGET 145 ERHKIRARQN RAYLERD<font color=red>C</font>PA QLQQLLELGR GVLDQQVPPL VKVTHHV-TS |
1k5nA 148 eaar-vaeql raylegecve wlrrylengk etlqradppk thvthhpisd |
1k5nA 148 eaar-vaeql raylegecve wlrrylengk etlqradppk thvthhpisd |
||
Line 38: | Line 274: | ||
− | TARGET 194 |
+ | TARGET 194 SVTTLR<font color=red>C</font>RAL NYYPQ<font color=red>N</font>ITMK WLKDKQPMDA KEFEPKDVLP NGDGTYQGWI |
1k5nA 197 heatlrcwal gfypaeitlt wqrdgedqt- qdtelvetrp agdrtfqkwa |
1k5nA 197 heatlrcwal gfypaeitlt wqrdgedqt- qdtelvetrp agdrtfqkwa |
||
Line 45: | Line 281: | ||
− | TARGET 244 TLAVPPGEEQ |
+ | TARGET 244 TLAVPPGEEQ RYT<font color=red>C</font>QVEHPG LDQPLIVIWE P |
1k5nA 246 avvvpsgeeq rytchvqheg lpkpltlrwe p- |
1k5nA 246 avvvpsgeeq rytchvqheg lpkpltlrwe p- |
||
Line 63: | Line 299: | ||
− | TARGET 49 VSSRISSQMW LQLSQSLKGW DHMFTVDFWT I- |
+ | TARGET 49 VSSRISSQMW LQLSQSLKGW DHMFTVDFWT I-MENH<font color=red>N</font>HSK ESHTLQVILG |
1zs8A 51 mkqe-ppeyw knetehamga sllarrtliy mvtennnkkn dyhtlqevfg |
1zs8A 51 mkqe-ppeyw knetehamga sllarrtliy mvtennnkkn dyhtlqevfg |
||
Line 70: | Line 306: | ||
− | TARGET 98 |
+ | TARGET 98 <font color=red>C</font>EMQED<font color=red>N</font>ST- EGYWKYGYDG QDHLEFCPDT LDWRAAEPRA WPTKLEWERH |
1zs8A 100 cnvahdgsfl gghygltyyg ydyiilnedl nswttegkvg gkfnsvt--- |
1zs8A 100 cnvahdgsfl gghygltyyg ydyiilnedl nswttegkvg gkfnsvt--- |
||
Line 77: | Line 313: | ||
− | TARGET 147 KIRARQNRAY |
+ | TARGET 147 KIRARQNRAY LERD<font color=red>C</font>PAQLQ QLLELGRGVL DQQVPPLVKV THHVTSSVTT |
1zs8A 153 ----egwrty lkgecterfl rcldlgketl lrsdaprthv thk---vtvt |
1zs8A 153 ----egwrty lkgecterfl rcldlgketl lrsdaprthv thk---vtvt |
||
Line 84: | Line 320: | ||
− | TARGET 197 |
+ | TARGET 197 LR<font color=red>C</font>RALNYYP Q<font color=red>N</font>ITMKWLKD KQPMDAKEFE PKDVLPNGDG TYQGWITLAV |
1zs8A 200 lrcwalgfyp aditltwkrd gknht-qdme lpdtrpagdg tfqkwaavvv |
1zs8A 200 lrcwalgfyp aditltwkrd gknht-qdme lpdtrpagdg tfqkwaavvv |
||
Line 91: | Line 327: | ||
− | TARGET 247 |
+ | TARGET 247 PPGEEQRYT<font color=red>C</font> QVEHPGLDQP LIVIWE |
1zs8A 249 pfgeelrytc hvhheglpgp ltlkwg- |
1zs8A 249 pfgeelrytc hvhheglpgp ltlkwg- |
||
Line 102: | Line 338: | ||
− | TARGET 1 HSKESHT |
+ | TARGET 1 HSKESHT LQVILG<font color=red>C</font>EMQ ED<font color=red>N</font>-STEGYW KYGYDGQDHL |
2iadB 2 ghatqgvtaa s--sherhfv vqfkgecyyt ngtqrirlvt ryiynreeyv |
2iadB 2 ghatqgvtaa s--sherhfv vqfkgecyyt ngtqrirlvt ryiynreeyv |
||
Line 109: | Line 345: | ||
− | TARGET 37 EFCPDTLDWR AAEPRAWPTK LEWERHKIRA RQNRAYLERD |
+ | TARGET 37 EFCPDTLDWR AAEPRAWPTK LEWERHKIRA RQNRAYLERD <font color=red>C</font>PAQLQQLLE |
2iadB 39 rydsdvgeyr avtelgrpda eywnsqpeil ertraevdta crhnyegp-- |
2iadB 39 rydsdvgeyr avtelgrpda eywnsqpeil ertraevdta crhnyegp-- |
||
Line 116: | Line 352: | ||
− | TARGET 87 LGRGVLDQQV PPLVKVTHHV TSS---VTTL |
+ | TARGET 87 LGRGVLDQQV PPLVKVTHHV TSS---VTTL R<font color=red>C</font>RALNYYPQ <font color=red>N</font>ITMKWLKDK |
2iadB 87 etstslrrle qpnvaislsr tealnhhntl vcsvtdfypa kikvrwfrng |
2iadB 87 etstslrrle qpnvaislsr tealnhhntl vcsvtdfypa kikvrwfrng |
||
Line 123: | Line 359: | ||
− | TARGET 134 QPMDAKEFEP KDVLPNGDGT YQGWITLAVP |
+ | TARGET 134 QPMDAKEFEP KDVLPNGDGT YQGWITLAVP PGEEQRYT<font color=red>C</font>Q VEHPGLDQPL |
2iadB 136 qee-tvgvss tqlirngdwt fqvlvmlemt phqgevytch vehpslkspi |
2iadB 136 qee-tvgvss tqlirngdwt fqvlvmlemt phqgevytch vehpslkspi |
||
Line 148: | Line 384: | ||
− | TARGET 49 TPWVSSRISS QMWLQLSQSL KGWDHMFTVD |
+ | TARGET 49 TPWVSSRISS QMWLQLSQSL KGWDHMFTVD FWTIMENH<font color=red>N</font>H SKESHTLQVI |
3dbxA 54 rpwvqeitae tevkkilsfs mvgirntirf mhemt-akag ldyprvfqih |
3dbxA 54 rpwvqeitae tevkkilsfs mvgirntirf mhemt-akag ldyprvfqih |
||
Line 155: | Line 391: | ||
− | TARGET 99 |
+ | TARGET 99 LG<font color=red>C</font>EMQED<font color=red>N</font>S TEGYWKYGYD GQDHLEFCPD TLDWRAAEPR A--WPTKLEW |
3dbxA 103 tgcklytngt rwsfvnigeg grdlvtyels rerwvpqrst llakvmsntl |
3dbxA 103 tgcklytngt rwsfvnigeg grdlvtyels rerwvpqrst llakvmsntl |
||
Line 162: | Line 398: | ||
− | TARGET 147 ERHKIRARQN |
+ | TARGET 147 ERHKIRARQN RAYLERD<font color=red>C</font>PA QLQQLLELGR GVLDQQVPPL VKVTHHVTS- |
3dbxA 153 tdlravsgfl ehifsssfpn yilmlheegr tdlerrvppm avvfartagq |
3dbxA 153 tdlravsgfl ehifsssfpn yilmlheegr tdlerrvppm avvfartagq |
||
Line 169: | Line 405: | ||
− | TARGET 196 |
+ | TARGET 196 SVTTLR<font color=red>C</font>RAL NYYPQ<font color=red>N</font>ITMK WLKDKQPMD- AKEFEPKDVL PNGDGTYQGW |
3dbxA 203 vqlllvcrvt sfyprpiavt wlrdgrevpp spalstgtvl pnadltyqlr |
3dbxA 203 vqlllvcrvt sfyprpiavt wlrdgrevpp spalstgtvl pnadltyqlr |
||
Line 176: | Line 412: | ||
− | TARGET 245 ITLAVPPGEE |
+ | TARGET 245 ITLAVPPGEE QRYT<font color=red>C</font>QVEHP GLD-QPLIVI WE |
3dbxA 253 stllvspqdg hgyacrvqhc slgdrsllvp whh |
3dbxA 253 stllvspqdg hgyacrvqhc slgdrsllvp whh |
||
Latest revision as of 15:52, 4 June 2012
Modeller
1K5NA
simple modeller alignment
>P1;1K5N structureX:1K5N: 1 :A:+276 :A:MOL_ID 1; MOLECULE MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-B*2 CHAIN A; FRAGMENT HLA-B*2709 HEAVY CHAIN, EXTRACELLULAR DOMAIN; SYNONYM LYMPHOCYTE ANTIGEN HLA-B27; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN, LIGHT CHAIN; CHAIN B; ENGINEERED YES; MOL_ID 3; MOLECULE NONAMERIC MODEL PEPTIDE M9; CHAIN C; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE HLA-B OR HLAB; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 3; SYNTHETIC YES; OTHER_DETAILS THIS PEPTIDE WAS CHEMICALLY SYNTHESISED.: 1.09: 0.12 -------------------------GSHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAP WIEQE-GPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQHAYDGKDYI ALNEDLSSWTAADTAAQITQRKWEAARV-AEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE ATLRCWALGFYPAEITLTWQRDGED-QTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL RWEP-------------------------------------------------* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHE--SRRVEPRTP WVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKE-SHTLQVILGCEMQEDNST-EGYWKYGYDGQDHL EFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHH-VTSSV TTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIV IWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
2d modeller alignment
>P1;1K5N structureX:1K5N: 1 :A:+276 :A:MOL_ID 1; MOLECULE MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-B*2 CHAIN A; FRAGMENT HLA-B*2709 HEAVY CHAIN, EXTRACELLULAR DOMAIN; SYNONYM LYMPHOCYTE ANTIGEN HLA-B27; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN, LIGHT CHAIN; CHAIN B; ENGINEERED YES; MOL_ID 3; MOLECULE NONAMERIC MODEL PEPTIDE M9; CHAIN C; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE HLA-B OR HLAB; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 3; SYNTHETIC YES; OTHER_DETAILS THIS PEPTIDE WAS CHEMICALLY SYNTHESISED.: 1.09: 0.12 -G------------------------SHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAP WIE-QEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQHAYDGKDYI ALNEDLSSWTAADTAAQITQRKWEAARV-AEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE ATLRCWALGFYPAEITLTWQRDGEDQT-QDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL RWEP-------------------------------------------------* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYD--HESRRVEPRTP WVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSK-ESHTLQVILGCEMQEDNS-TEGYWKYGYDGQDHL EFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSS-V TTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIV IWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
1ZS8A
simple modeller alignment
>P1;1ZS8 structureX:1ZS8: 1 :A:+261 :A:MOL_ID 1; MOLECULE HISTOCOMPATIBILITY 2, M REGION LOCUS 10.5; CHAIN A, C, E, G, I; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B, D, F, H, J; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; GENE M10.5; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31: 3.00: 0.31 --------------------------SHWLKTFRIVIMEPGILEPRFIQVSYVDSIQYQGFDSRSG-MQPRAAWM KQEPPEYWKNETEHAMGASLLARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFLGGHYGLTYYGYDYIILN EDLNSWTTEGKVG-------GKFNSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPRTHVTHKVT---VTLR CWALGFYPADITLTWKRDGKN-HTQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCHVHHEGLPGPLTLKWG- -------------------------------------------------* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNS-TEGYWKYGYDGQDHLEFC PDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLR CRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
2d modeller alignment
>P1;1ZS8 structureX:1ZS8: 1 :A:+261 :A:MOL_ID 1; MOLECULE HISTOCOMPATIBILITY 2, M REGION LOCUS 10.5; CHAIN A, C, E, G, I; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B, D, F, H, J; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; GENE M10.5; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31: 3.00: 0.31 --------SHWLKTFRIVIMEPGIL-------------E-----PRFIQVSYVDSIQYQGFDSRS-GMQPRAAWM KQE-PPEYWKNETEHAMGASLLARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFLGGHYGLTYYGYDYIIL NEDLNSWTTEG------KVG-GKFNSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPRTHVTHKVT---VTL RCWALGFYPADITLTWKRDGKN-HTQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCHVHHEGLPGPL----- -----TLKWG----------------------------------------* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDF-WTIMENHNHSKESHTLQVILGCEMQEDNS-TEGYWKYGYDGQDHLEF CPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTL RCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWE PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
2IADB
simple modeller alignment
>P1;2IAD structureX:2IAD: 2S:B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 ---------------GHATQGVTAASSHERHFVVQFKGE-------------------CYYTNGTQRIRLVT--- -------------------------------------------------------------RYIYNREEYVRYDS DVGEYRAVTELGRPDAEYWNSQPEILERTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHNTLV CSVTDFYPAKIKVRWFRNGQE-ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKSPITVEWSS -------------------------------------------------* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQL-LELGRGVLDQQVPPLVKVTHHVTSSVTTLR CRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
2d modeller alignment
>P1;2IAD structureX:2IAD: 2S:B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 -G-HATQGV-------TAA------SSHERH--F---------VVQFKGECYYTN--------GTQRIRLVTRYI YNR---EEYVRYDSDV-G-------EYRAVTE--------------LG------RPDAEYWNSQ----------P EILERTRAEVD---T---ACRHNYEGPETSTSLRR--LEQPNVAISLSR------TEAL---NHH-----NTLVC SVTDFYPAKIKVRWFRNGQE-ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKSPITVEW--S -S----------------------------------------------*
>P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRC RALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
3DBXA
simple modeller alignment
>P1;3DBX structureX:3DBX: 7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 PEESQFFQLFYTLLLGNV------------------SSTELTGMAL------LADVPIMVLDPHTWNLNICRPWV QE-ITAETEVKKILSFSMVGIRNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYEL SRERWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLL LVCRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLLV PW-------------------------------------------------HH* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP DTLDWRAAEPRAWPTKLEWERHKIRARQN--RAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTL R-CRALNYYPQNITMKWLKDKQPMDAK-EFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL-DQPLIV IWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
2d modeller alignment
>P1;3DBX structureX:3DBX: 7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 ------PEESQFFQLFYTLLLGNV--S----------STELTGMALLA-----DVPIMVLDPH-TWNLNICRPWV Q-EITAETEVKKILSFSMVGIRNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYEL SRERWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLL LVCRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLLV PWH------------------------------------------H------- >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP DTLDWRAAEPRAWPTKLEWERHKIRARQN--RAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSV-TT LRCRALNYYPQNITMKWLKDKQPMD-AKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGL-DQPLIV IWEPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
MSA1
>P1;1K5NA structureX:1K5N:1 :A:+276 :A:MOL_ID 1; MOLECULE MAJOR HISTOCOMPATIBILITY COMPLEX MOLECULE HLA-B*2 CHAIN A; FRAGMENT HLA-B*2709 HEAVY CHAIN, EXTRACELLULAR DOMAIN; SYNONYM LYMPHOCYTE ANTIGEN HLA-B27; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN, LIGHT CHAIN; CHAIN B; ENGINEERED YES; MOL_ID 3; MOLECULE NONAMERIC MODEL PEPTIDE M9; CHAIN C; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE HLA-B OR HLAB; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM ESCHERICHIA COLI; EXPRESSION_SYSTEM_TAXID 562; MOL_ID 3; SYNTHETIC YES; OTHER_DETAILS THIS PEPTIDE WAS CHEMICALLY SYNTHESISED.: 1.09: 0.12 GSHSMRYFHTSVSRPGRGE-----------------------PRFITVGYVDDTLFVRFDSDAASPREEPRAPWI EQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQHAYDGKDYIALN EDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLR CWALGFYPAEITLTWQRDGEDQ--TQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGL-PKPLT--- ---------------------------------------------LRWEP* >P1;1ZS8A structureX:1ZS8:1 :A:+261 :A:MOL_ID 1; MOLECULE HISTOCOMPATIBILITY 2, M REGION LOCUS 10.5; CHAIN A, C, E, G, I; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B, D, F, H, J; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; GENE M10.5; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31: 3.00: 0.31 -SHWLKTFRIVIMEPGILE-----------------------PRFIQVSYVDSIQYQGFDSRSGM---QPRAAWM KQEPPEYWKNETEHAMGASLLARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFLGGHYGLTYYGYDYIILN EDLNSWTTEGKVGG------KFNSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPRTHVTHKV----TVTLR CWALGFYPADITLTWKRDGKNH--TQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCHVHHEGL-PGPLT--- ---------------------------------------------LKWG-* >P1;2IADB structureX:2IAD:2S :B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 GHATQGVTAASSHERHFVV-----------------------QFKGECYYTNGTQRIRLVTRYIY---------- NREEYVRYDSDVGEYRAVTELGRPDAEYWNSQ------------------------------------------- ----------------------PEILERTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHNTLV CSVTDFYPAKIKVRWFRNGQEE--TVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSL-KSPIT--- ---------------------------------------------VEWSS* >P1;3DBXA structureX:3DBX:7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 PEESQFFQLFYTLLLGNVS-----------------------STELTGMALLADVPIMVLDPHTWNLNICRPWVQ EITAETEVKKILSFSMVGIRNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYELSR ERWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLLLV CRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLL--- ---------------------------------------------VPWHH* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVT-TLR CRALNYYPQNITMKWLKDKQPMD-AKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWE PSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
MSA2
>P1;1ZS8A structureX:1ZS8:1 :A:+261 :A:MOL_ID 1; MOLECULE HISTOCOMPATIBILITY 2, M REGION LOCUS 10.5; CHAIN A, C, E, G, I; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B, D, F, H, J; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; GENE M10.5; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M; EXPRESSION_SYSTEM TRICHOPLUSIA NI; EXPRESSION_SYSTEM_COMMON CABBAGE LOOPER; EXPRESSION_SYSTEM_TAXID 7111; EXPRESSION_SYSTEM_STRAIN TN5; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS; EXPRESSION_SYSTEM_PLASMID PACUW31: 3.00: 0.31 SHWLKTFRI--VIMEPGILEPRFIQVSYVDSIQYQGFDSRSGMQPRAAWMK----QEPPEYWKNETEHAMGASLL ARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFL-------------------------GGHYGLTYYGYDY IILNEDLNSWTTEGKVGGKFNSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPRTHV-----THKVTVTLRC WALGFYPADITLTWKRDGKN--HTQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCHVHHEGLPG-PLT---- --------------------------------------------LKWG-* >P1;2IADB structureX:2IAD:2S :B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 GHATQG-------VTAASSHERHFVVQFKGECYYTNGTQRIRLVTRYIYNR----EEYVRYDSDVGEYRAVTEL- ---------------------------------------------------------------GRPDAEYWNSQP EILERTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHN----------------------TLVC SVTDFYPAKIKVRWFRNGQE--ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKS-PIT---- --------------------------------------------VEWSS* >P1;3DBXA structureX:3DBX:7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 PEESQFFQLFYTLLLGNVSSTELTGMALLADVPIMVLDPHTWNLNICRPWV----QEITAETEVKKILSFSMVGI RNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRW------------------SFVNIGEGGRDLVTYELSRE RWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLLLVC RVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLL---- --------------------------------------------VPWHH* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRC RALNYYPQNITMKWLKDKQPM-DAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
MSA3
>P1;2IADB structureX:2IAD:2S :B:+201 :B:MOL_ID 1; MOLECULE MHC CLASS II I-AD; CHAIN A; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES; MOL_ID 2; MOLECULE MHC CLASS II I-AD; CHAIN B; FRAGMENT RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LI INFLUENZA HEMAGGLUTININ PEPTIDE; ENGINEERED YES:MOL_ID 1; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB-C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2; MOL_ID 2; FRAGMENT RESIDUES 126P - 138P OF CHAIN B; ORGANISM_SCIENTIFIC MUS MUSCULUS; ORGANISM_COMMON HOUSE MOUSE; ORGANISM_TAXID 10090; STRAIN BALB/C; CELL_LINE S2; ORGAN TAIL; EXPRESSION_SYSTEM DROSOPHILA MELANOGASTER; EXPRESSION_SYSTEM_COMMON FRUIT FLY; EXPRESSION_SYSTEM_TAXID 7227; EXPRESSION_SYSTEM_CELL_LINE S2: 2.40: 0.25 GHATQGVTAASSHERHFVV-------------QFKGECYYTNGTQRIRLVTRYIYNREEYVRYDSDVGEYRAVTE LGRPDAEYWN------------------------------------SQPEILERTRAEVDTACRHNYE------- --GPETSTSLRRLEQPNVAISLSRTEALNH---------------------------------------HNTLVC SVTDFYPAKIKVRWFRNGQE--ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKS-PITV--- ---------------------------------------------EWSS* >P1;3DBXA structureX:3DBX:7 :A:+279 :A:MOL_ID 1; MOLECULE CD1-2 ANTIGEN; CHAIN A; FRAGMENT ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; ENGINEERED YES; MOL_ID 2; MOLECULE BETA-2-MICROGLOBULIN; CHAIN B; SYNONYM BETA-2-MICROGLOBULIN FORM PI 5.3; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC GALLUS GALLUS; ORGANISM_COMMON CHICKEN; ORGANISM_TAXID 9031; GENE CD1-2; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10; MOL_ID 2; ORGANISM_SCIENTIFIC HOMO SAPIENS; ORGANISM_COMMON HUMAN; ORGANISM_TAXID 9606; GENE B2M, CDABP0092, HDCMA22P; EXPRESSION_SYSTEM SPODOPTERA FRUGIPERDA; EXPRESSION_SYSTEM_TAXID 7108; EXPRESSION_SYSTEM_STRAIN SF9; EXPRESSION_SYSTEM_VECTOR_TYPE BACULOVIRUS SHUTTLE VECTOR; EXPRESSION_SYSTEM_PLASMID PBACPHP10: 2.00: 0.22 PEESQFFQLFYTLLLGNVS-------------STELTGMALLADVPIMVLDPHTWNLNICRPWVQEITAETEVKK ILSFSMVGIRNTIRFMHEMTAKAGLDYPRVFQIHTGCKLYTNGTRWSFVNIGEGGRDLVTYELSRERW------- --VPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYILMLHEEGRTDLERRVPPMAVVFARTAGQVQLLLVC RVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDRSLLV--- ---------------------------------------------PWHH* >P1;Q30201 sequence:Q30201: : : : ::: 0.00: 0.00 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWV SSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCP DTLDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRC RALNYYPQNITMKWLKDKQPM-DAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEP SPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE*
SwissModel
1k5nA
TARGET 1 RSHSLHYL FMGASEQDLG LSLFEALGYV DDQLFVFYDH ES--RRVEPR 1k5nA 1 gshsmryf htsvsrpgrg eprfitvgyv ddtlfvrfds daaspreepr TARGET ssssss sssss ssssssss s ssssssss sss 1k5nA ssssss sssss ssssssss s ssssssss sss TARGET 47 TPWVSSRISS QMWLQLSQSL KGWDHMFTVD FWTIMENHNH S-KESHTLQV 1k5nA 49 apwie-qegp eywdretqic kakaqtdred lrtllryynq seagshtlqn TARGET hhh hhhhhhhhhh hhhhhhhhhh hhhhhhhh sssss 1k5nA hhh hhhhhhhhhh hhhhhhhhhh hhhhhhhh sssss TARGET 96 ILGCEMQEDN S-TEGYWKYG YDGQDHLEFC PDTLDWRAAE PRAWPTKLEW 1k5nA 98 mygcdvgpdg rllrgyhqha ydgkdyialn edlsswtaad taaqitqrkw TARGET sssssss s s ssssssss ss sssssss sssss hhhhhhhhhh 1k5nA ssssss sssssss ss sssssss sssss hhhhhhhhhh TARGET 145 ERHKIRARQN RAYLERDCPA QLQQLLELGR GVLDQQVPPL VKVTHHV-TS 1k5nA 148 eaar-vaeql raylegecve wlrrylengk etlqradppk thvthhpisd TARGET hh hhh hhhhhhhhhh hhhhhhhh s ssssss 1k5nA h hhhhh hhhhhhhhhh hhhhhhhh s ssssssss TARGET 194 SVTTLRCRAL NYYPQNITMK WLKDKQPMDA KEFEPKDVLP NGDGTYQGWI 1k5nA 197 heatlrcwal gfypaeitlt wqrdgedqt- qdtelvetrp agdrtfqkwa TARGET ssssssss s sss ssss sss sss ss s ssssss 1k5nA ssssssssss s sss ssss sss sss ss s ssssss TARGET 244 TLAVPPGEEQ RYTCQVEHPG LDQPLIVIWE P 1k5nA 246 avvvpsgeeq rytchvqheg lpkpltlrwe p- TARGET ssss hh sssssss sss 1k5nA ssssss hh sssssss sss
1zs8A
TARGET 1 SHSLHYLF MGASEQDLGL SLFEALGYVD DQLFVFYDHE SRRVEPRTPW 1zs8A 1 shwlktfr ivimepgile prfiqvsyvd siqyqgfdsr sg-mqpraaw TARGET sssssss ssss sssssssss ssssssss sss h 1zs8A sssssss ssss sssssssss ssssssss sss h TARGET 49 VSSRISSQMW LQLSQSLKGW DHMFTVDFWT I-MENHNHSK ESHTLQVILG 1zs8A 51 mkqe-ppeyw knetehamga sllarrtliy mvtennnkkn dyhtlqevfg TARGET h hhh hhhhhhhhhh hhhhhhhhhh ssssssss 1zs8A h hhh hhhhhhhhhh hhhhhhhhhh hhhhh ssssssss TARGET 98 CEMQEDNST- EGYWKYGYDG QDHLEFCPDT LDWRAAEPRA WPTKLEWERH 1zs8A 100 cnvahdgsfl gghygltyyg ydyiilnedl nswttegkvg gkfnsvt--- TARGET ssss sss sssssssss ssssss sssss 1zs8A ssss sss sssssssss ssssss sssss hh TARGET 147 KIRARQNRAY LERDCPAQLQ QLLELGRGVL DQQVPPLVKV THHVTSSVTT 1zs8A 153 ----egwrty lkgecterfl rcldlgketl lrsdaprthv thk---vtvt TARGET hhhhh hhhhhhhhhh hhhh hhh ssss sss ss 1zs8A hhhhhh h hhhhhh hhh hhhh ssss sss ss TARGET 197 LRCRALNYYP QNITMKWLKD KQPMDAKEFE PKDVLPNGDG TYQGWITLAV 1zs8A 200 lrcwalgfyp aditltwkrd gknht-qdme lpdtrpagdg tfqkwaavvv TARGET sssssss sssssss sss ssssssssss 1zs8A sssssss sssssss sss ssssssssss TARGET 247 PPGEEQRYTC QVEHPGLDQP LIVIWE 1zs8A 249 pfgeelrytc hvhheglpgp ltlkwg- TARGET ssss sss sss 1zs8A ssss sss sss
2iadB
TARGET 1 HSKESHT LQVILGCEMQ EDN-STEGYW KYGYDGQDHL 2iadB 2 ghatqgvtaa s--sherhfv vqfkgecyyt ngtqrirlvt ryiynreeyv TARGET sssssssss ssssss ssss ssss 2iadB s ssssssssss ssssss sssss ssss TARGET 37 EFCPDTLDWR AAEPRAWPTK LEWERHKIRA RQNRAYLERD CPAQLQQLLE 2iadB 39 rydsdvgeyr avtelgrpda eywnsqpeil ertraevdta crhnyegp-- TARGET ssss s ss hhhh hhhh hhh hhhhhhhhhh hhh 2iadB ssss s ss hhh hhhh hhh hhhhhhhhhh hhhhhh TARGET 87 LGRGVLDQQV PPLVKVTHHV TSS---VTTL RCRALNYYPQ NITMKWLKDK 2iadB 87 etstslrrle qpnvaislsr tealnhhntl vcsvtdfypa kikvrwfrng TARGET sssssss sss ssssss sssssss 2iadB sssssss sss ssssss sssssss TARGET 134 QPMDAKEFEP KDVLPNGDGT YQGWITLAVP PGEEQRYTCQ VEHPGLDQPL 2iadB 136 qee-tvgvss tqlirngdwt fqvlvmlemt phqgevytch vehpslkspi TARGET sss ssss s sss s sssssssss sssss ss s 2iadB sss ssss s sss s sssssssss sssss ss s TARGET 184 IVIWEP 2iadB 185 tvewss- TARGET ssss 2iadB ssss
3dbxA
TARGET 1 LLRSHSLH YLFMGASEQD LGLSLFEALG YVDDQLFVFY DHESRRVEPR 3dbxA 7 peesqffq lfytlll-gn vssteltgma lladvpimvl dphtwnlnic TARGET ssss ssssssss ssssssss sss ssssss s sssss 3dbxA ssss sssssss s ssssssss sss ssssss s sssss TARGET 49 TPWVSSRISS QMWLQLSQSL KGWDHMFTVD FWTIMENHNH SKESHTLQVI 3dbxA 54 rpwvqeitae tevkkilsfs mvgirntirf mhemt-akag ldyprvfqih TARGET hh hhhh hhhhhhh hhhh ssssss 3dbxA hh hhhhhh hhhhhhh hhhhh hh ssssss TARGET 99 LGCEMQEDNS TEGYWKYGYD GQDHLEFCPD TLDWRAAEPR A--WPTKLEW 3dbxA 103 tgcklytngt rwsfvnigeg grdlvtyels rerwvpqrst llakvmsntl TARGET ssssss s ssssssssss ssssssss ssssss hhhhhh 3dbxA ssssss s ssssssssss ssssssss ssssss hhhhhhhhhh TARGET 147 ERHKIRARQN RAYLERDCPA QLQQLLELGR GVLDQQVPPL VKVTHHVTS- 3dbxA 153 tdlravsgfl ehifsssfpn yilmlheegr tdlerrvppm avvfartagq TARGET h hhhhhh hhhh hhh hhhhhhh hhh s ssssss 3dbxA h hhhhhh hhhh hhh hhhhhhh hhh s ssssssss TARGET 196 SVTTLRCRAL NYYPQNITMK WLKDKQPMD- AKEFEPKDVL PNGDGTYQGW 3dbxA 203 vqlllvcrvt sfyprpiavt wlrdgrevpp spalstgtvl pnadltyqlr TARGET ssssssss s sss ssss sss sssss s ss sssss 3dbxA sssssssss s sss ssss sss sssss s ss sssss TARGET 245 ITLAVPPGEE QRYTCQVEHP GLD-QPLIVI WE 3dbxA 253 stllvspqdg hgyacrvqhc slgdrsllvp whh TARGET sssss sssssss ssss s 3dbxA sssss sssssss ssss s