Difference between revisions of "Homology-modelling HEXA/swissmodel 3CUI"

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(Created page with "TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY 3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------ …")
 
 
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Prediction of Swissmodel. Target is HEXA_HUMAN, the template is 3CUI, chain A. Here you can see the secondary structure prediction based on the alignment.
TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY
 
3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------
 
 
TARGET hhhhhh s ss sssss s sssssss
 
3cuiA hhhhhhh h sssss s
 
   
   
  +
TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY
TARGET 49 DVSSAAQPGC SVLDEAFQRY RDLLFGSGSW PRPYLTGKRH TLEKNVLVVS
 
3cuiA 23 ---------- rlseaqykai adsefn---- ---------l vvaenamkwd
+
3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------
+
TARGET ssssss s hhhhhh hhh ssss s ssssss sssss
+
TARGET hhhhhh s ss sssss s sssssss
3cuiA hhhhh hhh s s ssss
+
3cuiA hhhhhhh h sssss s
  +
  +
  +
TARGET 49 DVSSAAQPGC SVLDEAFQRY RDLLFGSGSW PRPYLTGKRH TLEKNVLVVS
  +
3cuiA 23 ---------- rlseaqykai adsefn---- ---------l vvaenamkwd
  +
  +
TARGET ssssss s hhhhhh hhh ssss s ssssss sssss
  +
3cuiA hhhhh hhh s s ssss
  +
  +
  +
TARGET 99 VVTPGCNQLP TLESVENYTL TINDDQCLLL SETVWGALRG LETFSQLVWK
  +
3cuiA 50 atepsqnsfs ---------- ---------- ----fgagdr vasyaadtgk
  +
  +
TARGET ss s sssss s ssss ssshhhhh hhhhhhhh
  +
3cuiA hhhhh hhhhhhhh
  +
  +
  +
TARGET 149 SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL
  +
3cuiA 76 elyghtlvwh sqlpdwakn- ---------- ---------- -lngsafesa
  +
  +
TARGET hhh sssssss sssss ss hhhhhh
  +
3cuiA sss hhhh hhhhhh
  +
  +
  +
TARGET 199 NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL
  +
3cuiA 104 mvnhvtkvad ---------- ---------- ---------- ----------
  +
  +
TARGET hhhhhhhhh sss sss sssss sss ssssss sss
  +
3cuiA hhhhhhhhhh
  +
  +
  +
TARGET 249 RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY
  +
3cuiA 114 ---------h fegkvaswd- ----vvneaf adgggrrqds afqqklgn--
  +
  +
TARGET sss sss sss ss s sss hhhhh
  +
3cuiA h h ssss s ss s sss hhhhh
  +
  +
  +
TARGET 299 EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF
  +
3cuiA 148 gyietafraa raadptaklc indynvegin aksns-lydl vkd--fkarg
  +
  +
TARGET hhhhhhhhh hhhsss ss sss
  +
3cuiA hhhhhhhhhh hhh sss sss hhhhh hhhh hhh hhhh
  +
  +
  +
TARGET 349 KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV
  +
3cuiA 195 vpldcvgfqs hlivgqvpgd frqnlqrfad lgvdvr---- ----------
  +
  +
TARGET sssssss ssss sss hhhhhhhhhh sss sss ssss ssss
  +
3cuiA sssssss ssss hhhhhhhhhh sss
  +
  +
  +
TARGET 399 NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ
  +
3cuiA 231 --iteldirm rtps------ ----datkla tqaadykkvv qacmqvtrcq
  +
  +
TARGET ssss ssss sssssss s ssss hhhhh hhhhhhhhhh hhhsss s
  +
3cuiA ss ssss ss hhhhh hhhhhhhhhh hhhh s
  +
  +
  +
TARGET 449 KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE
  +
3cuiA 269 gvtvwg---- ----itdkys wvpdvfp--g egaalvwd-- ------asya
  +
  +
TARGET sssssss s ssss hhhh s ssss
  +
3cuiA ssss hhhh s ssss sss s
  +
  +
  +
TARGET 499 RLSHFRCELL RRGV
  +
3cuiA 301 kkpayaavme afga-
  +
  +
TARGET hhhhhhh h
  +
3cuiA ss hhhhhhh h
   
   
  +
Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology modelling]].
TARGET 99 VVTPGCNQLP TLESVENYTL TINDDQCLLL SETVWGALRG LETFSQLVWK
 
3cuiA 50 atepsqnsfs ---------- ---------- ----fgagdr vasyaadtgk
 
 
TARGET ss s sssss s ssss ssshhhhh hhhhhhhh
 
3cuiA hhhhh hhhhhhhh
 
 
 
TARGET 149 SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL
 
3cuiA 76 elyghtlvwh sqlpdwakn- ---------- ---------- -lngsafesa
 
 
TARGET hhh sssssss sssss ss hhhhhh
 
3cuiA sss hhhh hhhhhh
 
 
 
TARGET 199 NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL
 
3cuiA 104 mvnhvtkvad ---------- ---------- ---------- ----------
 
 
TARGET hhhhhhhhh sss sss sssss sss ssssss sss
 
3cuiA hhhhhhhhhh
 
 
 
TARGET 249 RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY
 
3cuiA 114 ---------h fegkvaswd- ----vvneaf adgggrrqds afqqklgn--
 
 
TARGET sss sss sss ss s sss hhhhh
 
3cuiA h h ssss s ss s sss hhhhh
 
 
 
TARGET 299 EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF
 
3cuiA 148 gyietafraa raadptaklc indynvegin aksns-lydl vkd--fkarg
 
 
TARGET hhhhhhhhh hhhsss ss sss
 
3cuiA hhhhhhhhhh hhh sss sss hhhhh hhhh hhh hhhh
 
 
 
TARGET 349 KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV
 
3cuiA 195 vpldcvgfqs hlivgqvpgd frqnlqrfad lgvdvr---- ----------
 
 
TARGET sssssss ssss sss hhhhhhhhhh sss sss ssss ssss
 
3cuiA sssssss ssss hhhhhhhhhh sss
 
 
 
TARGET 399 NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ
 
3cuiA 231 --iteldirm rtps------ ----datkla tqaadykkvv qacmqvtrcq
 
 
TARGET ssss ssss sssssss s ssss hhhhh hhhhhhhhhh hhhsss s
 
3cuiA ss ssss ss hhhhh hhhhhhhhhh hhhh s
 
 
 
TARGET 449 KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE
 
3cuiA 269 gvtvwg---- ----itdkys wvpdvfp--g egaalvwd-- ------asya
 
 
TARGET sssssss s ssss hhhh s ssss
 
3cuiA ssss hhhh s ssss sss s
 
 
 
TARGET 499 RLSHFRCELL RRGV
 
3cuiA 301 kkpayaavme afga-
 
 
TARGET hhhhhhh h
 
3cuiA ss hhhhhhh h
 

Latest revision as of 13:58, 12 June 2011

Prediction of Swissmodel. Target is HEXA_HUMAN, the template is 3CUI, chain A. Here you can see the secondary structure prediction based on the alignment.


TARGET    9                SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY
3cuiA     1                attlkeaadg ---------- --agrdfgfa ldpn------
                                                                      
TARGET                        hhhhhh           s ss   sssss s sssssss 
3cuiA                         hhhhhhh              h  sssss s         


TARGET    49    DVSSAAQPGC SVLDEAFQRY RDLLFGSGSW PRPYLTGKRH TLEKNVLVVS
3cuiA     23    ---------- rlseaqykai adsefn---- ---------l vvaenamkwd
                                                                      
TARGET              ssssss s   hhhhhh hhh   ssss s   ssssss sssss     
3cuiA                           hhhhh hhh  s              s ssss       


TARGET    99    VVTPGCNQLP TLESVENYTL TINDDQCLLL SETVWGALRG LETFSQLVWK
3cuiA     50    atepsqnsfs ---------- ---------- ----fgagdr vasyaadtgk
                                                                      
TARGET                  ss s sssss  s ssss         ssshhhhh hhhhhhhh  
3cuiA                                                 hhhhh hhhhhhhh  


TARGET    149   SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL
3cuiA     76    elyghtlvwh sqlpdwakn- ---------- ---------- -lngsafesa
                                                                      
TARGET                          hhh   sssssss         sssss ss  hhhhhh
3cuiA           sss            hhhh                             hhhhhh 


TARGET    199   NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL
3cuiA     104   mvnhvtkvad ---------- ---------- ---------- ----------
                                                                      
TARGET          hhhhhhhhh  sss  sss   sssss  sss ssssss          sss  
3cuiA           hhhhhhhhhh                                            


TARGET    249   RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY
3cuiA     114   ---------h fegkvaswd- ----vvneaf adgggrrqds afqqklgn--
                                                                      
TARGET               sss       sss    sss     ss s   sss    hhhhh     
3cuiA                    h h    ssss      s   ss s   sss    hhhhh     


TARGET    299   EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF
3cuiA     148   gyietafraa raadptaklc indynvegin aksns-lydl vkd--fkarg
                                                                       
TARGET           hhhhhhhhh hhhsss  ss sss                             
3cuiA           hhhhhhhhhh hhh    sss sss        hhhhh hhhh hhh  hhhh  


TARGET    349   KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV
3cuiA     195   vpldcvgfqs hlivgqvpgd frqnlqrfad lgvdvr---- ----------
                                                                      
TARGET             sssssss ssss  sss  hhhhhhhhhh    sss sss ssss  ssss
3cuiA              sssssss ssss       hhhhhhhhhh    sss                


TARGET    399   NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ
3cuiA     231   --iteldirm rtps------ ----datkla tqaadykkvv qacmqvtrcq
                                                                      
TARGET          ssss  ssss sssssss  s ssss hhhhh hhhhhhhhhh hhhsss   s
3cuiA             ss  ssss ss              hhhhh hhhhhhhhhh hhhh     s


TARGET    449   KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE
3cuiA     269   gvtvwg---- ----itdkys wvpdvfp--g egaalvwd-- ------asya
                                                                      
TARGET          sssssss  s ssss        hhhh    s ssss                 
3cuiA           ssss                   hhhh    s ssss sss            s


TARGET    499   RLSHFRCELL RRGV                                       
3cuiA     301   kkpayaavme afga-                                      
                                                                       
TARGET             hhhhhhh h                                          
3cuiA           ss hhhhhhh h


Back to [Homology modelling].