Difference between revisions of "Homology-modelling HEXA/3bc9.pir"
From Bioinformatikpedia
(Created page with ">P1;3BC9 structureX:/home/student/week4/3BC9.pdb: 15 :A:+585 :A:MOL_ID 1; MOLECULE ALPHA AMYLASE, CATALYTIC REGION; CHAIN A; SYNONYM AMYB; EC 3.2.1.1; ENGINEERED YES:MOL_I…") |
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− | >P1;3BC9 |
+ | >P1;3BC9<br> |
− | structureX: |
+ | structureX:3BC9.pdb: 15 :A:+585 :A:MOL_ID 1; MOLECULE ALPHA AMYLASE, CATALYTIC REGION; CHAIN A;<br> |
+ | SYNONYM AMYB; EC 3.2.1.1; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HALOTHERMOTHRIX ORENII H<br> |
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− | SLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQLALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLS |
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+ | 168; ORGANISM_TAXID 373903; STRAIN H 168; GENE AMYB; EXPRESSION_SYSTEM ESCHERICHIA COLI BL21(DE3);<br> |
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− | YEVIDIYDNHLQGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGF |
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+ | EXPRESSION_SYSTEM_TAXID 469008; EXPRESSION_SYSTEM_STRAIN BL21(DE3); EXPRESSION_SYSTEM_VECTOR_TYPE<br> |
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− | TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADY |
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+ | PLASMID; EXPRESSION_SYSTEM_PLASMID PET-19B: 1.35: 0.15<br> |
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− | AETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDE-KSWDWTYNWDED |
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+ | SLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQLALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLS<br> |
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− | YLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDD |
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+ | YEVIDIYDNHLQGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGF<br> |
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− | LKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRK |
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+ | TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADY<br> |
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− | YQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KLLTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVL |
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+ | AETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDE-KSWDWTYNWDED<br> |
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− | MISDGTSGNVAGK-WINSRQPDTEF-YDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPVE* |
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+ | YLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDD<br> |
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− | |||
+ | LKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRK<br> |
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− | >P1;hexa |
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+ | YQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KLLTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVL<br> |
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− | sequence:reference: : : : :::-1.00:-1.00 |
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+ | MISDGTSGNVAGK-WINSRQPDTEF-YDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPVE*<br> |
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− | ------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ |
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+ | <br> |
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− | PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD |
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+ | >P1;hexa<br> |
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− | QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY |
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+ | sequence:reference: : : : :::-1.00:-1.00<br> |
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− | NKLNVFHWHLVDDPSFPYESFTFPEL-MRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSW-GP |
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+ | ------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ<br> |
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− | GIPGLLTPCYSGSEPSGTFGPVNPSLNN-TY-EFMSTFFLEVSSVFPDFYLHLGG-----DEVDFT-CW-KSNPE |
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+ | PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD<br> |
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− | IQDFMRKKGF--GEDF-KQLESFYIQTL-LDIVSSYGKGYVVWQEVFDN-KVKIQP----DTIIQVWREDI-PVN |
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+ | QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY<br> |
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− | YMKELELVTKA-GFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKALVIGGEACMWGEY--VDNTNLVP |
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+ | NKLNVFHWHLVDDPSFPYESFTFPEL-MRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSW-GP<br> |
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− | RLWPR-AGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT-----* |
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+ | GIPGLLTPCYSGSEPSGTFGPVNPSLNN-TY-EFMSTFFLEVSSVFPDFYLHLGG-----DEVDFT-CW-KSNPE<br> |
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+ | IQDFMRKKGF--GEDF-KQLESFYIQTL-LDIVSSYGKGYVVWQEVFDN-KVKIQP----DTIIQVWREDI-PVN<br> |
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+ | YMKELELVTKA-GFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKALVIGGEACMWGEY--VDNTNLVP<br> |
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+ | RLWPR-AGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT-----*<br> |
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+ | <br> |
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+ | <br> |
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+ | Back to [[https://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
Latest revision as of 14:27, 11 June 2011
>P1;3BC9
structureX:3BC9.pdb: 15 :A:+585 :A:MOL_ID 1; MOLECULE ALPHA AMYLASE, CATALYTIC REGION; CHAIN A;
SYNONYM AMYB; EC 3.2.1.1; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HALOTHERMOTHRIX ORENII H
168; ORGANISM_TAXID 373903; STRAIN H 168; GENE AMYB; EXPRESSION_SYSTEM ESCHERICHIA COLI BL21(DE3);
EXPRESSION_SYSTEM_TAXID 469008; EXPRESSION_SYSTEM_STRAIN BL21(DE3); EXPRESSION_SYSTEM_VECTOR_TYPE
PLASMID; EXPRESSION_SYSTEM_PLASMID PET-19B: 1.35: 0.15
SLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQLALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLS
YEVIDIYDNHLQGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGF
TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADY
AETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDE-KSWDWTYNWDED
YLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDD
LKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRK
YQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KLLTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVL
MISDGTSGNVAGK-WINSRQPDTEF-YDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPVE*
>P1;hexa
sequence:reference: : : : :::-1.00:-1.00
------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ
PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD
QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY
NKLNVFHWHLVDDPSFPYESFTFPEL-MRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSW-GP
GIPGLLTPCYSGSEPSGTFGPVNPSLNN-TY-EFMSTFFLEVSSVFPDFYLHLGG-----DEVDFT-CW-KSNPE
IQDFMRKKGF--GEDF-KQLESFYIQTL-LDIVSSYGKGYVVWQEVFDN-KVKIQP----DTIIQVWREDI-PVN
YMKELELVTKA-GFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKALVIGGEACMWGEY--VDNTNLVP
RLWPR-AGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT-----*
Back to [Homology Modelling]