Difference between revisions of "Homology-modelling HEXA/3bc9.pir"

From Bioinformatikpedia
(Created page with ">P1;3BC9 structureX:/home/student/week4/3BC9.pdb: 15 :A:+585 :A:MOL_ID 1; MOLECULE ALPHA AMYLASE, CATALYTIC REGION; CHAIN A; SYNONYM AMYB; EC 3.2.1.1; ENGINEERED YES:MOL_I…")
 
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
>P1;3BC9
+
>P1;3BC9<br>
structureX:/home/student/week4/3BC9.pdb: 15 :A:+585 :A:MOL_ID 1; MOLECULE ALPHA AMYLASE, CATALYTIC REGION; CHAIN A; SYNONYM AMYB; EC 3.2.1.1; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HALOTHERMOTHRIX ORENII H 168; ORGANISM_TAXID 373903; STRAIN H 168; GENE AMYB; EXPRESSION_SYSTEM ESCHERICHIA COLI BL21(DE3); EXPRESSION_SYSTEM_TAXID 469008; EXPRESSION_SYSTEM_STRAIN BL21(DE3); EXPRESSION_SYSTEM_VECTOR_TYPE PLASMID; EXPRESSION_SYSTEM_PLASMID PET-19B: 1.35: 0.15
+
structureX:3BC9.pdb: 15 :A:+585 :A:MOL_ID 1; MOLECULE ALPHA AMYLASE, CATALYTIC REGION; CHAIN A;<br>
  +
SYNONYM AMYB; EC 3.2.1.1; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HALOTHERMOTHRIX ORENII H<br>
SLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQLALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLS
 
  +
168; ORGANISM_TAXID 373903; STRAIN H 168; GENE AMYB; EXPRESSION_SYSTEM ESCHERICHIA COLI BL21(DE3);<br>
YEVIDIYDNHLQGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGF
 
  +
EXPRESSION_SYSTEM_TAXID 469008; EXPRESSION_SYSTEM_STRAIN BL21(DE3); EXPRESSION_SYSTEM_VECTOR_TYPE<br>
TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADY
 
  +
PLASMID; EXPRESSION_SYSTEM_PLASMID PET-19B: 1.35: 0.15<br>
AETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDE-KSWDWTYNWDED
 
  +
SLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQLALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLS<br>
YLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDD
 
  +
YEVIDIYDNHLQGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGF<br>
LKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRK
 
  +
TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADY<br>
YQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KLLTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVL
 
  +
AETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDE-KSWDWTYNWDED<br>
MISDGTSGNVAGK-WINSRQPDTEF-YDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPVE*
 
  +
YLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDD<br>
 
  +
LKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRK<br>
>P1;hexa
 
  +
YQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KLLTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVL<br>
sequence:reference: : : : :::-1.00:-1.00
 
  +
MISDGTSGNVAGK-WINSRQPDTEF-YDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPVE*<br>
------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ
 
  +
<br>
PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD
 
  +
>P1;hexa<br>
QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY
 
  +
sequence:reference: : : : :::-1.00:-1.00<br>
NKLNVFHWHLVDDPSFPYESFTFPEL-MRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSW-GP
 
  +
------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ<br>
GIPGLLTPCYSGSEPSGTFGPVNPSLNN-TY-EFMSTFFLEVSSVFPDFYLHLGG-----DEVDFT-CW-KSNPE
 
  +
PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD<br>
IQDFMRKKGF--GEDF-KQLESFYIQTL-LDIVSSYGKGYVVWQEVFDN-KVKIQP----DTIIQVWREDI-PVN
 
  +
QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY<br>
YMKELELVTKA-GFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKALVIGGEACMWGEY--VDNTNLVP
 
  +
NKLNVFHWHLVDDPSFPYESFTFPEL-MRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSW-GP<br>
RLWPR-AGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT-----*
 
  +
GIPGLLTPCYSGSEPSGTFGPVNPSLNN-TY-EFMSTFFLEVSSVFPDFYLHLGG-----DEVDFT-CW-KSNPE<br>
  +
IQDFMRKKGF--GEDF-KQLESFYIQTL-LDIVSSYGKGYVVWQEVFDN-KVKIQP----DTIIQVWREDI-PVN<br>
  +
YMKELELVTKA-GFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKALVIGGEACMWGEY--VDNTNLVP<br>
  +
RLWPR-AGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT-----*<br>
  +
<br>
  +
<br>
  +
Back to [[https://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]]

Latest revision as of 14:27, 11 June 2011

>P1;3BC9
structureX:3BC9.pdb: 15 :A:+585 :A:MOL_ID 1; MOLECULE ALPHA AMYLASE, CATALYTIC REGION; CHAIN A;
SYNONYM AMYB; EC 3.2.1.1; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HALOTHERMOTHRIX ORENII H
168; ORGANISM_TAXID 373903; STRAIN H 168; GENE AMYB; EXPRESSION_SYSTEM ESCHERICHIA COLI BL21(DE3);
EXPRESSION_SYSTEM_TAXID 469008; EXPRESSION_SYSTEM_STRAIN BL21(DE3); EXPRESSION_SYSTEM_VECTOR_TYPE
PLASMID; EXPRESSION_SYSTEM_PLASMID PET-19B: 1.35: 0.15
SLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQLALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLS
YEVIDIYDNHLQGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGF
TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADY
AETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDE-KSWDWTYNWDED
YLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDD
LKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRK
YQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KLLTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVL
MISDGTSGNVAGK-WINSRQPDTEF-YDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPVE*

>P1;hexa
sequence:reference:  : :  : :::-1.00:-1.00
------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ
PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD
QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY
NKLNVFHWHLVDDPSFPYESFTFPEL-MRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSW-GP
GIPGLLTPCYSGSEPSGTFGPVNPSLNN-TY-EFMSTFFLEVSSVFPDFYLHLGG-----DEVDFT-CW-KSNPE
IQDFMRKKGF--GEDF-KQLESFYIQTL-LDIVSSYGKGYVVWQEVFDN-KVKIQP----DTIIQVWREDI-PVN
YMKELELVTKA-GFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKALVIGGEACMWGEY--VDNTNLVP
RLWPR-AGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT-----*



Back to [Homology Modelling]