Difference between revisions of "Homology-modelling HEXA/3bc9.pir"

From Bioinformatikpedia
Line 14: Line 14:
 
>P1;hexa<br>
 
>P1;hexa<br>
 
sequence:reference: : : : :::-1.00:-1.00<br>
 
sequence:reference: : : : :::-1.00:-1.00<br>
------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ<br>
+
------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ<br>
 
PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD<br>
 
PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD<br>
 
QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY<br>
 
QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY<br>

Revision as of 14:22, 11 June 2011

>P1;3BC9
structureX:3BC9.pdb: 15 :A:+585 :A:MOL_ID 1; MOLECULE ALPHA AMYLASE, CATALYTIC REGION; CHAIN A;
SYNONYM AMYB; EC 3.2.1.1; ENGINEERED YES:MOL_ID 1; ORGANISM_SCIENTIFIC HALOTHERMOTHRIX ORENII H
168; ORGANISM_TAXID 373903; STRAIN H 168; GENE AMYB; EXPRESSION_SYSTEM ESCHERICHIA COLI BL21(DE3);
EXPRESSION_SYSTEM_TAXID 469008; EXPRESSION_SYSTEM_STRAIN BL21(DE3); EXPRESSION_SYSTEM_VECTOR_TYPE
PLASMID; EXPRESSION_SYSTEM_PLASMID PET-19B: 1.35: 0.15
SLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQLALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLS
YEVIDIYDNHLQGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGF
TAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADY
AETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDE-KSWDWTYNWDED
YLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDD
LKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDTDRDEGSYTVSIYSRK
YQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KLLTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVL
MISDGTSGNVAGK-WINSRQPDTEF-YDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPVE*

>P1;hexa
sequence:reference:  : :  : :::-1.00:-1.00

------------------MTSSRLWFSLLLAAAFAGRATALWP-WP-QNFQTSDQRYVLYPNNFQFQYDVSSAAQ

PGCSVL-DEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVVSV---VT--PGCNQLPTLESVENYTLTINDD
QCLLLSETVWG--ALRGLETFSQLVWKSAE-GTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAY
NKLNVFHWHLVDDPSFPYESFTFPEL-MRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSW-GP
GIPGLLTPCYSGSEPSGTFGPVNPSLNN-TY-EFMSTFFLEVSSVFPDFYLHLGG-----DEVDFT-CW-KSNPE
IQDFMRKKGF--GEDF-KQLESFYIQTL-LDIVSSYGKGYVVWQEVFDN-KVKIQP----DTIIQVWREDI-PVN
YMKELELVTKA-GFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKALVIGGEACMWGEY--VDNTNLVP
RLWPR-AGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT-----*