Difference between revisions of "Homology-modelling HEXA"

From Bioinformatikpedia
(Created page with "== Homology structure groups === We decided to choose 5 sequences for each group: {| border="1" style="text-align:center; border-spacing:0;" |- |colspan="3" | > 60% sequence i…")
 
(Homology structure groups =)
Line 1: Line 1:
== Homology structure groups ===
+
== Homology structure groups ==
   
We decided to choose 5 sequences for each group:
+
We decided to choose every 5% one protein:
   
 
{| border="1" style="text-align:center; border-spacing:0;"
 
{| border="1" style="text-align:center; border-spacing:0;"

Revision as of 11:34, 7 June 2011

Homology structure groups

We decided to choose every 5% one protein:

> 60% sequence identity
PDB id name similarity
1ht6_A AMY1, alpha-amylase iso 95%
3aj7_A Oligo-1,6-glucosidase 90%
1h4p_A Glucan 1,3-beta-glucosidase 85.2%
3bc9_A AMYB, alpha amylase, ca 80.8%
2zum_A 458AA long hypothetical 75%
3bmv_A Cyclomaltodextrin gluca 70.3%
2f2h_A Putative family 31 gluc 64.8%
3emz_A Xylanase, endo-1,4-beta 61%
> 40%
2dep_A Xylanase B, thermostabl 54.9%
3cui_A EXO-beta-1,4-glucanase; 49.5%
1vhc_A Putative KHG/KDPG aldol 45.1%
2hk0_A D-psicose 3-epimerase 40.8%
< 40%
2g0w_A LMO2234 protein; putati 35.5%
3q94_A Fructose-bisphosphate a 30.0%
3hn3_A Beta-G1, beta-glucuroni 25.1%
3lut_A Voltage-gated potassium 20.1%