Hemochromatosis SNP Mapping MSA

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Revision as of 02:25, 10 June 2012 by Bernhoferm (talk | contribs) (Created page with "== SNPdbe == sp|Q30201|HFE_HUMAN MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80 B990874 MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFM…")
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SNPdbe

sp|Q30201|HFE_HUMAN  MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80
B990874              MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80
NP_620578            MGPRARPALLLLMLLQTAVLQGRLL-----------------------PLGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 57
NP_620573            MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80
Q30201               MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80
NP_000401            MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80
NP_620572            MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80
A001949              MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80
NP_620580            MGPRARPALLLLMLLQTAVLQGRLL------------------------------------------------------- 25
NP_620577            MGPRARPALLLLMLLQTAVLQGRLLQS----------------------------------------------------- 27
NP_620575            MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIS 80
NP_620576            MGPRARPALLLLMLLQTAVLQGRLLQS----------------------------------------------------- 27
NP_620579            MGPRARPALLLLMLLQTAVLQGRLL------------------------------------------------------- 25
                     *************************                                                       

sp|Q30201|HFE_HUMAN  SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 160
B990874              SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 160
NP_620578            SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 137
NP_620573            SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSK----------------------------------------------- 113
Q30201               SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 160
NP_000401            SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 160
NP_620572            SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSK----------------------------------------------- 113
A001949              SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 160
NP_620580            -------------------------------------------------------------------------------- 25
NP_620577            -----------------------------------HTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 72
NP_620575            SQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 160
NP_620576            -----------------------------------HTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEP 72
NP_620579            -------------------------------------------------------------------------------- 25
                                                                                                     

sp|Q30201|HFE_HUMAN  RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 240
B990874              RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 240
NP_620578            RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 217
NP_620573            ---------------------------------------------VPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 148
Q30201               RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 240
NP_000401            RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 240
NP_620572            -----------------------------------------------------------VTTLRCRALNYYPQNITMKWL 134
A001949              RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 240
NP_620580            -------------------------------------------------------------------------------- 25
NP_620577            RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQ--------------VTTLRCRALNYYPQNITMKWL 138
NP_620575            RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQ--------------VTTLRCRALNYYPQNITMKWL 226
NP_620576            RAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 152
NP_620579            ---------------------------------------------LPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL 60
                                                                                                     

sp|Q30201|HFE_HUMAN  KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 320
B990874              KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 320
NP_620578            KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 297
NP_620573            KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 228
Q30201               KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 320
NP_000401            KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 320
NP_620572            KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 214
A001949              KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 320
NP_620580            ---------------------------------------------------------QPSPSGTLVIGVISGIAVFVVIL 48
NP_620577            KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 218
NP_620575            KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 306
NP_620576            KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 232
NP_620579            KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPSPSGTLVIGVISGIAVFVVIL 140
                                                                              :**********************

sp|Q30201|HFE_HUMAN  FIGILFIILRKRQGSRGAMGHYVLAERE 348
B990874              FIGILFIILRKRQGSRGAMGHYVLAERE 348
NP_620578            FIGILFIILRKRQGSRGAMGHYVLAERE 325
NP_620573            FIGILFIILRKRQGSRGAMGHYVLAERE 256
Q30201               FIGILFIILRKRQGSRGAMGHYVLAERE 348
NP_000401            FIGILFIILRKRQGSRGAMGHYVLAERE 348
NP_620572            FIGILFIILRKRQGSRGAMGHYVLAERE 242
A001949              FIGILFIILRKRQGSRGAMGHYVLAERE 348
NP_620580            FIGILFIILRKRQGSRGAMGHYVLAERE 76
NP_620577            FIGILFIILRKRQGSRGAMGHYVLAERE 246
NP_620575            FIGILFIILRKRQGSRGAMGHYVLAERE 334
NP_620576            FIGILFIILRKRQGSRGAMGHYVLAERE 260
NP_620579            FIGILFIILRKRQGSRGAMGHYVLAERE 168
                     ****************************