Difference between revisions of "Hemochromatosis 2011"

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<sup>by [[User:Greil|Robert Greil]] and [[User:Landerer|Cedric Landerer]]</sup>
 
== Summary ==
 
== Summary ==
[[Image:cb25_sml.jpg|thumb|Source: http://www.ncbi.nlm.nih.gov/books/NBK2311]]
+
[[Image:cb25_sml.jpg|thumb|Figure 1: <br> Course of hereditary hemochromatosis. The graph shows the clinical course of iron overload. The graph shows the relation between age (X-axis) and the concentration of iron in the body(Y-axis) <br>Source: http://www.ncbi.nlm.nih.gov/books/NBK2311]]
  +
This entry is about the primary form and especially type 1 of Hemochromatosis. Hemochromatosis is a hereditary autosomal recessive genetic disorder caused by a mutation of the HFE-Gene and the breakdown of the regulation of the iron absorption. It was first described by [http://en.wikipedia.org/wiki/Armand_Trousseau Armand Trousseau] in 1865 in a report about [http://en.wikipedia.org/wiki/Diabetes_mellitus diabetes].
  +
 
Iron is conserved by all living cells because it is necessary for aerobic respiration. But an excessive amount of iron stored in the body is toxic. Hemochromatosis is the generally used term if the body stores too much iron. There are two different forms with subtypes of hemochromatosis possible: ''primary'' and ''secondary''.
 
Iron is conserved by all living cells because it is necessary for aerobic respiration. But an excessive amount of iron stored in the body is toxic. Hemochromatosis is the generally used term if the body stores too much iron. There are two different forms with subtypes of hemochromatosis possible: ''primary'' and ''secondary''.
   
Line 7: Line 10:
 
''Secondary'' hemochromatosis can be temporarily acquired if a person is affected by chronic alcoholism or received many blood transfusion in a short time.
 
''Secondary'' hemochromatosis can be temporarily acquired if a person is affected by chronic alcoholism or received many blood transfusion in a short time.
   
  +
The symptoms of Hemochromatosis change with the age of the patient. A genral overview is shown in Figure 1. But the slope can differ from each individual.
This entry is about the primary form and especially type 1 of it. It is a hereditary autosomal recessive genetic disorder caused by a mutation of the HFE-Gene and the breakdown of the regulation of the iron absorption. It was first described by [http://en.wikipedia.org/wiki/Armand_Trousseau Armand Trousseau] in 1865 in a report about [http://en.wikipedia.org/wiki/Diabetes_mellitus diabetes].
 
   
 
== Phenotype ==
 
== Phenotype ==
Line 38: Line 41:
 
Primary Hemochromatosis occurs at different subtypes, each of them caused by a mutation of a important protein. But all of these have in common that an excess of iron is deposited in different organs leading to their malfunction. The symptoms occur mostly between the fourth to fifth decade of lifetime. Women show symptoms typically later than males because of the menstruation and the resulting loss of blood.
 
Primary Hemochromatosis occurs at different subtypes, each of them caused by a mutation of a important protein. But all of these have in common that an excess of iron is deposited in different organs leading to their malfunction. The symptoms occur mostly between the fourth to fifth decade of lifetime. Women show symptoms typically later than males because of the menstruation and the resulting loss of blood.
   
'''Type 1''': [http://www.ncbi.nlm.nih.gov/omim/235200 '''HFE''' OMIM: #235200] ''classical'' haemochromatosis also called ''hereditary'' hemochromatosis
+
'''Type 1''': [http://www.ncbi.nlm.nih.gov/omim/235200 '''HFE''' OMIM: #235200] ''classical'' hemochromatosis also called ''hereditary'' hemochromatosis
   
 
Mutation at the HFE gene on the short arm of the chromosome 6 position 6p21.3 encoding the protein ''hereditary hemochromatosis''.
 
Mutation at the HFE gene on the short arm of the chromosome 6 position 6p21.3 encoding the protein ''hereditary hemochromatosis''.
Line 63: Line 66:
 
It can be diagnosed by a simple blood test or a liver biopsy. <ref>http://www.nlm.nih.gov/medlineplus/ency/article/000327.htm</ref>
 
It can be diagnosed by a simple blood test or a liver biopsy. <ref>http://www.nlm.nih.gov/medlineplus/ency/article/000327.htm</ref>
   
* '''Blood test''': The concentrations of ''serum ferritin'' ('''SF''', amount of stored iron) and ''serum iron'' ('''SI''', amount of free or unboud iron) and the percentage of ''transferrin saturation'' ('''TS''', effencieny of binding iron) are measured. It's likely to be affected hemochromatosis if these values are all higher than the average/recommend ones. Other blood elements can also be used for diagnosing like the level of blood sugar (glucose) or the concentration of ''alpha fetoprotein''.
+
* '''Blood test''': The concentrations of ''serum ferritin'' ('''SF''', amount of stored iron) and ''serum iron'' ('''SI''', amount of free or unbound iron) and the percentage of ''transferrin saturation'' ('''TS''', efficiency of binding iron) are measured. It's likely to be affected hemochromatosis if these values are all higher than the average/recommend ones. Other blood elements can also be used for diagnosing like the level of blood sugar (glucose) or the concentration of ''alpha fetoprotein''.
* '''Liver biopsy''': A tiny part of the tissue of the liver is extracted during a local anesthetic and afterwards examined. If the level of the stored iron at the liver is higher than average/recommend values, it is recommend to do a blood test of the protein concentrations. This is a reliable testing because of the breakdown of the regulation the body stores agumented iron at the liver.
+
* '''Liver biopsy''': A tiny part of the tissue of the liver is extracted during a local anesthetic and afterwards examined. If the level of the stored iron at the liver is higher than average/recommend values, it is recommend to do a blood test of the protein concentrations. This is a reliable testing because of the breakdown of the regulation the body stores augmented iron at the liver.
   
 
=== Treatment ===
 
=== Treatment ===
 
There are two treatments which can but must not be combined to remove iron from the body.
 
There are two treatments which can but must not be combined to remove iron from the body.
   
* '''Phlebotomy''': Around .5 liter of blood are extracted once a week, until iron level begin to even out to normal level. This prodecure is repeated as long it needs to maintain the iron level. After the initial loss the frequency of the action can be slightly lowered to once a month but have to kept on during the whole life.
+
* '''Phlebotomy''': Around .5 liter of blood are extracted once a week, until iron level begin to even out to normal level. This procedure is repeated as long it needs to maintain the iron level. After the initial loss the frequency of the action can be slightly lowered to once a month but have to kept on during the whole life.
 
* '''Diet''': A special diet which includes only food with a low iron level is also good and necessary. This diet prohibits every food or drinks, which directly affect the liver like alcohol. If used together with frequent phlebotomy the iron level will lower even faster to normal level. Therefore it compensates the need for phlebotomy and lowers the frequency significant. The diet has to be kept during the whole life, too.
 
* '''Diet''': A special diet which includes only food with a low iron level is also good and necessary. This diet prohibits every food or drinks, which directly affect the liver like alcohol. If used together with frequent phlebotomy the iron level will lower even faster to normal level. Therefore it compensates the need for phlebotomy and lowers the frequency significant. The diet has to be kept during the whole life, too.
   
 
=== Cross-references ===
 
=== Cross-references ===
The disesase is also described in detail at
+
The disease is also described in detail at
 
* [http://en.wikipedia.org/wiki/Iron_overload Wikipedia]
 
* [http://en.wikipedia.org/wiki/Iron_overload Wikipedia]
 
* [http://www.hgmd.cf.ac.uk/ac/gene.php?gene=HFE HGMD]
 
* [http://www.hgmd.cf.ac.uk/ac/gene.php?gene=HFE HGMD]
Line 84: Line 87:
   
 
== Biochemical disease mechanism ==
 
== Biochemical disease mechanism ==
[[Image:Protein_HFE_PDB_1a6z.png|thumb|Source: http://www.pdb.org/pdb/explore/explore.do?structureId=1A6Z]]
+
[[Image:Protein_HFE_PDB_1a6z.png|thumb|Figure 2: The protein structure of the HFE protein. <br> Source: http://www.pdb.org/pdb/explore/explore.do?structureId=1A6Z]]
The HFE-Gene alleviates the binding of [http://en.wikipedia.org/wiki/Transferrin transferrin] which is the carrier protein for iron in the blood cyclus.
+
The HFE-Gene alleviates the binding of [http://en.wikipedia.org/wiki/Transferrin transferrin] which is the carrier protein for iron in the blood cyclus<ref>http://www.uniprot.org/uniprot/P02787</ref>.
With a mutated HFE-Gen, the intestines interpret a strong transferrin signal as an deficient in iron. Therefore the cells start an uncontrolled iron import, which leads to an iron
+
With a mutated HFE-Gen, the intestines interpret a strong transferrin signal as an deficient in iron. Therefore the cells start an uncontrolled iron import, which leads to an iron overload. The HFE-Protein is shown in Figure 2.
overload.
 
   
 
===Gene===
 
===Gene===
The HFE (''H''igh Iron ''FE'') gene is located on the short arm (p) of the chromosome 6 at position 6p22, it is between base pair 26,087,447 to 26,097,058. It contains 7 exons spanning around 12 kb and maps to the MHC region 6p21.3 in telomeric position. Therefore the position is almost everywhere defined as 6p21.3. There are homologs in almost all other vertebrate but the position of gene differs greatly.
+
The HFE (''H''igh Iron ''FE'') gene is located on the short arm (p) of the chromosome 6 at position 6p22, it is between base pair 26,087,447 to 26,097,058 (see Figure 3). It contains 7 exons spanning around 12 kb and maps to the MHC region 6p21.3 in telomeric position. Therefore the position is almost everywhere defined as 6p21.3. There are homologous in almost all other vertebrate but the position of gene differs greatly.
   
[[Image:Chr6.gif|thumb|Source: http://www.ornl.gov/sci/techresources/Human_Genome/posters/chromosome/hfe.shtml]]
+
[[Image:Chr6.gif|thumb|Figure 3 shows the position of the HFE gen in chromosome 6. <br> Source: http://www.ornl.gov/sci/techresources/Human_Genome/posters/chromosome/hfe.shtml]]
   
 
===Protein===
 
===Protein===
A MHC-related 6 domain membrane protein with 4 chains<ref>http://www.pdb.org/pdb/explore/explore.do?structureId=1A6Z</ref>. It is located in all
+
A MHC-related 6 domain membrane protein with 4 chains<ref>http://www.pdb.org/pdb/explore/explore.do?structureId=1A6Z</ref>. The chains differ in there configuration (see Figure 4 - 7). While chain 1 and 3 are Alpha Beta constructions, the shorter chains 2 and 4 are classified as Mainly Beta. It is located in all
 
tissues except for the brain<ref>http://www.uniprot.org/uniprot/Q30201</ref>.
 
tissues except for the brain<ref>http://www.uniprot.org/uniprot/Q30201</ref>.
   
 
{| class="centered"
 
{| class="centered"
|[[Image:1a6zA.png|thumb|chain 1<br/>Source: http://www.cathdb.info/pdb/1a6z]]
+
|[[Image:1a6zA.png|thumb|Figure 4 <br> chain 1 of the HFE protein.<br/>Source: http://www.cathdb.info/pdb/1a6z]]
|[[Image:1a6zB.png|thumb|chain 2<br/>Source: http://www.cathdb.info/pdb/1a6z]]
+
|[[Image:1a6zB.png|thumb|Figure 5 <br> chain 2 of the HFE protein.<br/>Source: http://www.cathdb.info/pdb/1a6z]]
|[[Image:1a6zC.png|thumb|chain 3<br/>Source: http://www.cathdb.info/pdb/1a6z]]
+
|[[Image:1a6zC.png|thumb|Figure 6 <br> chain 3 of the HFE protein.<br/>Source: http://www.cathdb.info/pdb/1a6z]]
|[[Image:1a6zD.png|thumb|chain 4<br/>Source: http://www.cathdb.info/pdb/1a6z]]
+
|[[Image:1a6zD.png|thumb|Figure 7 <br> chain 4 of the HFE protein.<br/>Source: http://www.cathdb.info/pdb/1a6z]]
 
|}
 
|}
   
Line 108: Line 110:
 
HFE is a regulator protein which forms a stable complex with the blood plasma glycoprotein transferrin receptor in the cell membrane. Therefore it controls the interaction between transferrin and transferrin receptor proteins. By complexing with the receptor, it reduces the affinity for iron-loaded transferrin.<ref>http://www.ncbi.nlm.nih.gov/pubmed/9465039</ref> It also regulates the expression of hepcidin, a hormone which is secreted by the liver<ref>http://bloodjournal.hematologylibrary.org/content/115/16/3374.full.pdf+html</ref>. Hepcidin is the so called master regulator of the iron metabolism. It binds to the iron channel protein ferroportin and inhibits the transport of iron out of the cells into the blood.
 
HFE is a regulator protein which forms a stable complex with the blood plasma glycoprotein transferrin receptor in the cell membrane. Therefore it controls the interaction between transferrin and transferrin receptor proteins. By complexing with the receptor, it reduces the affinity for iron-loaded transferrin.<ref>http://www.ncbi.nlm.nih.gov/pubmed/9465039</ref> It also regulates the expression of hepcidin, a hormone which is secreted by the liver<ref>http://bloodjournal.hematologylibrary.org/content/115/16/3374.full.pdf+html</ref>. Hepcidin is the so called master regulator of the iron metabolism. It binds to the iron channel protein ferroportin and inhibits the transport of iron out of the cells into the blood.
   
If the HFE protein has a disfunction due to a mutation, the repression of the iron import become disturbed because the affinity of the receptor for transferrin is not reduced. The exact mechanisms are not yet clear. Some mutations have a direct influence of the affinity, other decrase the ability to form complexes with beta2-microglobulin but have no effect on the affinity to bind iron-loaded transferrin.
+
If the HFE protein has a dysfunction due to a mutation, the repression of the iron import become disturbed because the affinity of the receptor for transferrin is not reduced. The exact mechanisms are not yet clear. Some mutations have a direct influence of the affinity, other decrease the ability to form complexes with beta2-microglobulin but have no effect on the affinity to bind iron-loaded transferrin.
   
 
=== Cross-references ===
 
=== Cross-references ===
Line 120: Line 122:
 
* [http://www.pdb.org/pdb/explore/explore.do?structureId=1A6Z PDB at HFE (HUMAN) HEMOCHROMATOSIS PROTEIN]
 
* [http://www.pdb.org/pdb/explore/explore.do?structureId=1A6Z PDB at HFE (HUMAN) HEMOCHROMATOSIS PROTEIN]
   
== Mutations ==
+
== Sequence ==
  +
===Reference sequence===
  +
* [[HFE_HUMAN_NM|FASTA: HFE_HUMAN Amino acid sequence]]
  +
  +
=== Mutations ===
 
There are [http://www.ncbi.nlm.nih.gov/omim/613609?report=Variants 11 disease causing allelic variants of the HFE-gene] available at the OMIM database.
 
There are [http://www.ncbi.nlm.nih.gov/omim/613609?report=Variants 11 disease causing allelic variants of the HFE-gene] available at the OMIM database.
   
Line 135: Line 141:
 
* HFE, GLN283PRO
 
* HFE, GLN283PRO
   
=== Reference sequence ===
+
== Tasks ==
   
  +
[[task_2|Task 2: Sequence and multiple alignments]]
* [[HFE_HUMAN_NM|FASTA: HFE_HUMAN Amino acid sequence]]
 
   
  +
[[task_3|Task 3: Sequence-based predictions]]
=== Neutral mutations ===
 
* [[example_sequence|Create one page per mutated sequence]].
 
   
  +
[[task_4|Task 4: Homology based structure predictions]]
=== Disease causing mutations ===
 
* [[example_sequence|Create one page per mutated sequence]].
 
   
  +
[[task_5|Task 5: Mapping SNPs]]
== Tasks ==
 
   
[[task_1|Task 2: Sequence and multiple alignments]]
+
[[task_6|Task 6: Sequence-based mutation analysis]]
[[task_3|Task 3: (to be filled with the right description)]]
 
   
  +
[[task_7|Task 7: Structure-based mutation analysis]]
== References ==
 
   
  +
[[task_8|Task 8: Molecular Dynamics Simulations]]
  +
  +
[[task_9|Task 9: Normal mode analysis]]
  +
  +
[[task_10|Task 10: Molecular Dynamcis analysis]]
  +
  +
== References ==
 
<references />
 
<references />
  +
  +
[[Category : Hemochromatosis]]

Latest revision as of 10:28, 29 March 2012

by Robert Greil and Cedric Landerer

Summary

Figure 1:
Course of hereditary hemochromatosis. The graph shows the clinical course of iron overload. The graph shows the relation between age (X-axis) and the concentration of iron in the body(Y-axis)
Source: http://www.ncbi.nlm.nih.gov/books/NBK2311

This entry is about the primary form and especially type 1 of Hemochromatosis. Hemochromatosis is a hereditary autosomal recessive genetic disorder caused by a mutation of the HFE-Gene and the breakdown of the regulation of the iron absorption. It was first described by Armand Trousseau in 1865 in a report about diabetes.

Iron is conserved by all living cells because it is necessary for aerobic respiration. But an excessive amount of iron stored in the body is toxic. Hemochromatosis is the generally used term if the body stores too much iron. There are two different forms with subtypes of hemochromatosis possible: primary and secondary.

Primary hemochromatosis is usually caused by a genetic problem or mutation, resulting in storing too much iron due malfunction at the regulation of the the iron absorption.

Secondary hemochromatosis can be temporarily acquired if a person is affected by chronic alcoholism or received many blood transfusion in a short time.

The symptoms of Hemochromatosis change with the age of the patient. A genral overview is shown in Figure 1. But the slope can differ from each individual.

Phenotype

Symptoms
decoloration/darkening of skin (also known as bronzening)
weakness
fatigue
heart failure
diabetes
arthritis (iron in joints)
loss of weight
loss of body hair
loss of sexual energy
liver cirrhosis
liver swelling

Primary Hemochromatosis occurs at different subtypes, each of them caused by a mutation of a important protein. But all of these have in common that an excess of iron is deposited in different organs leading to their malfunction. The symptoms occur mostly between the fourth to fifth decade of lifetime. Women show symptoms typically later than males because of the menstruation and the resulting loss of blood.

Type 1: HFE OMIM: #235200 classical hemochromatosis also called hereditary hemochromatosis

Mutation at the HFE gene on the short arm of the chromosome 6 position 6p21.3 encoding the protein hereditary hemochromatosis.

Type 2A: HFE2A OMIM: #602390 juvenile haemochromatosis (autosomal recessive)

Mutation at the HJV gene on the long arm of the chromosome 1 position 1q21 encoding the protein hemojuvelin.

Type 2B: HFE2B OMIM: #606464 juvenile haemochromatosis (autosomal recessive)

Mutation at the HAMP gene on the long arm of the chromosome 19 position 1q13 enconding the protein hepcidin

Type 3: HFE3 OMIM: #604250 (autosomal recessive)

Mutation at the TFR2 gene on the long arm of the chromosome 7 position 7q22 enconding the protein transferrin receptor 2.

Type 4: HFE4 OMIM: #604653 African iron overload (autosomal dominant)

Mutation at the SLC40A1 gene on the long arm of the chromosome 2 position 2q32.30 encoding the protein ferroportin.

There are some more subtypes, but their frequency in population is too rare, to go in detail.

Diagnosis

It can be diagnosed by a simple blood test or a liver biopsy. <ref>http://www.nlm.nih.gov/medlineplus/ency/article/000327.htm</ref>

  • Blood test: The concentrations of serum ferritin (SF, amount of stored iron) and serum iron (SI, amount of free or unbound iron) and the percentage of transferrin saturation (TS, efficiency of binding iron) are measured. It's likely to be affected hemochromatosis if these values are all higher than the average/recommend ones. Other blood elements can also be used for diagnosing like the level of blood sugar (glucose) or the concentration of alpha fetoprotein.
  • Liver biopsy: A tiny part of the tissue of the liver is extracted during a local anesthetic and afterwards examined. If the level of the stored iron at the liver is higher than average/recommend values, it is recommend to do a blood test of the protein concentrations. This is a reliable testing because of the breakdown of the regulation the body stores augmented iron at the liver.

Treatment

There are two treatments which can but must not be combined to remove iron from the body.

  • Phlebotomy: Around .5 liter of blood are extracted once a week, until iron level begin to even out to normal level. This procedure is repeated as long it needs to maintain the iron level. After the initial loss the frequency of the action can be slightly lowered to once a month but have to kept on during the whole life.
  • Diet: A special diet which includes only food with a low iron level is also good and necessary. This diet prohibits every food or drinks, which directly affect the liver like alcohol. If used together with frequent phlebotomy the iron level will lower even faster to normal level. Therefore it compensates the need for phlebotomy and lowers the frequency significant. The diet has to be kept during the whole life, too.

Cross-references

The disease is also described in detail at

Biochemical disease mechanism

Figure 2: The protein structure of the HFE protein.
Source: http://www.pdb.org/pdb/explore/explore.do?structureId=1A6Z

The HFE-Gene alleviates the binding of transferrin which is the carrier protein for iron in the blood cyclus<ref>http://www.uniprot.org/uniprot/P02787</ref>. With a mutated HFE-Gen, the intestines interpret a strong transferrin signal as an deficient in iron. Therefore the cells start an uncontrolled iron import, which leads to an iron overload. The HFE-Protein is shown in Figure 2.

Gene

The HFE (High Iron FE) gene is located on the short arm (p) of the chromosome 6 at position 6p22, it is between base pair 26,087,447 to 26,097,058 (see Figure 3). It contains 7 exons spanning around 12 kb and maps to the MHC region 6p21.3 in telomeric position. Therefore the position is almost everywhere defined as 6p21.3. There are homologous in almost all other vertebrate but the position of gene differs greatly.

Figure 3 shows the position of the HFE gen in chromosome 6.
Source: http://www.ornl.gov/sci/techresources/Human_Genome/posters/chromosome/hfe.shtml

Protein

A MHC-related 6 domain membrane protein with 4 chains<ref>http://www.pdb.org/pdb/explore/explore.do?structureId=1A6Z</ref>. The chains differ in there configuration (see Figure 4 - 7). While chain 1 and 3 are Alpha Beta constructions, the shorter chains 2 and 4 are classified as Mainly Beta. It is located in all tissues except for the brain<ref>http://www.uniprot.org/uniprot/Q30201</ref>.

Figure 4
chain 1 of the HFE protein.
Source: http://www.cathdb.info/pdb/1a6z
Figure 5
chain 2 of the HFE protein.
Source: http://www.cathdb.info/pdb/1a6z
Figure 6
chain 3 of the HFE protein.
Source: http://www.cathdb.info/pdb/1a6z
Figure 7
chain 4 of the HFE protein.
Source: http://www.cathdb.info/pdb/1a6z

Function

HFE is a regulator protein which forms a stable complex with the blood plasma glycoprotein transferrin receptor in the cell membrane. Therefore it controls the interaction between transferrin and transferrin receptor proteins. By complexing with the receptor, it reduces the affinity for iron-loaded transferrin.<ref>http://www.ncbi.nlm.nih.gov/pubmed/9465039</ref> It also regulates the expression of hepcidin, a hormone which is secreted by the liver<ref>http://bloodjournal.hematologylibrary.org/content/115/16/3374.full.pdf+html</ref>. Hepcidin is the so called master regulator of the iron metabolism. It binds to the iron channel protein ferroportin and inhibits the transport of iron out of the cells into the blood.

If the HFE protein has a dysfunction due to a mutation, the repression of the iron import become disturbed because the affinity of the receptor for transferrin is not reduced. The exact mechanisms are not yet clear. Some mutations have a direct influence of the affinity, other decrease the ability to form complexes with beta2-microglobulin but have no effect on the affinity to bind iron-loaded transferrin.

Cross-references

Links to proteins that are involved in causing the disease

Sequence

Reference sequence

Mutations

There are 11 disease causing allelic variants of the HFE-gene available at the OMIM database.

  • HFE, CYS282TYR
  • HFE, HIS63ASP
  • HFE, SER65CYS
  • HFE, 5569G-A
  • HFE, VAL53MET
  • HFE, VAL59MET
  • HFE, GLN127HIS
  • HFE, ARG330MET
  • HFE, ILE105THR
  • HFE, GLY93ARG
  • HFE, GLN283PRO

Tasks

Task 2: Sequence and multiple alignments

Task 3: Sequence-based predictions

Task 4: Homology based structure predictions

Task 5: Mapping SNPs

Task 6: Sequence-based mutation analysis

Task 7: Structure-based mutation analysis

Task 8: Molecular Dynamics Simulations

Task 9: Normal mode analysis

Task 10: Molecular Dynamcis analysis

References

<references />