Gaucher Disease: Task 10 - Normal mode analysis

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Revision as of 22:45, 3 September 2013 by Gerkej (talk | contribs) (WEBnm@)

lab journal

With normal mode analysis (NMA), you are able to simulate or analyse the natural resonant movements of proteins. There are two different webserver available to do a NMA, WEBnm@ and ElNemo. They provide the following information.

WEBnm@

  • Deformation energy
  • atomic fluctuations


ElNemo


WEBnm@

WEBnm@ uses only alpha-carbon atoms in the models for th normal mode analysis.

<figtable id="energy">

Mode Deformation Energy
7 1633.42
8 2358.92
9 2686.12
10 4886.37
11 5221.34
Five best values of the deformation energy for the lowest-frequency non-trivial modes.

</figtable>

ElNemo