Difference between revisions of "Gaucher Disease: Task 10 - Normal mode analysis"
From Bioinformatikpedia
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! style="background:#adceff;" | Deformation Energy |
! style="background:#adceff;" | Deformation Energy |
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| − | |7 1633.42 |
+ | |7 ||1633.42 |
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| − | |8 2358.92 |
+ | |8 || 2358.92 |
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| − | |9 2686.12 |
+ | |9 || 2686.12 |
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| − | |10 4886.37 |
+ | |10 || 4886.37 |
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| − | |11 5221.34 |
+ | |11 || 5221.34 |
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<center><small>'''<caption>''' Range and score distribution of all predicted HRas contacts and HRas contacts between residues with a sequence distance of >5 residues.</caption></small></center> |
<center><small>'''<caption>''' Range and score distribution of all predicted HRas contacts and HRas contacts between residues with a sequence distance of >5 residues.</caption></small></center> |
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</figtable> |
</figtable> |
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==ElNemo== |
==ElNemo== |
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Revision as of 22:44, 3 September 2013
With normal mode analysis (NMA), you are able to simulate or analyse the natural resonant movements of proteins. There are two different webserver available to do a NMA, WEBnm@ and ElNemo. They provide the following information.
WEBnm@
- Deformation energy
- atomic fluctuations
ElNemo
WEBnm@
WEBnm@ uses only alpha-carbon atoms in the models for th normal mode analysis.
<figtable id="energy">
| Mode | Deformation Energy |
|---|---|
| 7 | 1633.42 |
| 8 | 2358.92 |
| 9 | 2686.12 |
| 10 | 4886.37 |
| 11 | 5221.34 |
</figtable>
