Difference between revisions of "Gaucher Disease: Task 10 - Lab Journal"
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==WEBnm@== |
==WEBnm@== |
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+ | We run WEBnm@ on the [http://apps.cbu.uib.no/webnma/home server]. We used both chains (A,B) of the 1OGS.pdb structure and performed a default analysis. Additionally, we run a correlation matrix analysis. |
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==ElNemo== |
==ElNemo== |
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− | We executed ElNemo from the [http://www.igs.cnrs-mrs.fr/elnemo/ server] using the structure 1OGS and a cutoff for C |
+ | We executed ElNemo from the [http://www.igs.cnrs-mrs.fr/elnemo/ server] using the structure 1OGS and a cutoff for C-alpha atom pairs of 10 Å: option "cutoff used to identify elastic interactions (default =8)" under "Expert options for computing the eigenmodes". |
Latest revision as of 20:49, 4 September 2013
WEBnm@
We run WEBnm@ on the server. We used both chains (A,B) of the 1OGS.pdb structure and performed a default analysis. Additionally, we run a correlation matrix analysis.
ElNemo
We executed ElNemo from the server using the structure 1OGS and a cutoff for C-alpha atom pairs of 10 Å: option "cutoff used to identify elastic interactions (default =8)" under "Expert options for computing the eigenmodes".