Difference between revisions of "Gaucher Disease: Task 10 - Lab Journal"

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==WEBnm@==
 
==WEBnm@==
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We run WEBnm@ on the [http://apps.cbu.uib.no/webnma/home server]. We used both chains (A,B) of the 1OGS.pdb structure and performed a default analysis. Additionally, we run a correlation matrix analysis.
 
   
 
==ElNemo==
 
==ElNemo==
We executed ElNemo from the [http://www.igs.cnrs-mrs.fr/elnemo/ server] using the structure 1OGS and a cutoff for C<sub>&alpha;</sub> atom pairs of 10 &Aring;: option "cutoff used to identify elastic interactions (default =8)" under "Expert options for computing the eigenmodes".
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We executed ElNemo from the [http://www.igs.cnrs-mrs.fr/elnemo/ server] using the structure 1OGS and a cutoff for C-alpha atom pairs of 10 &Aring;: option "cutoff used to identify elastic interactions (default =8)" under "Expert options for computing the eigenmodes".

Latest revision as of 20:49, 4 September 2013

WEBnm@

We run WEBnm@ on the server. We used both chains (A,B) of the 1OGS.pdb structure and performed a default analysis. Additionally, we run a correlation matrix analysis.

ElNemo

We executed ElNemo from the server using the structure 1OGS and a cutoff for C-alpha atom pairs of 10 Å: option "cutoff used to identify elastic interactions (default =8)" under "Expert options for computing the eigenmodes".