Gaucher Disease: Task 09 - Lab Journal
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Contents
Preparation
1. Choose a structure to work with
In the former tasks, we worked with the reference structure 1OGS, because it has no gaps - but an offset of 39 residues at the N terminus, as all structures for our protein P04062 referenced in [| UniProt] - and has a pretty low resolution of 2.0 Å. However, there are four other structures with a lower resolution (all resolved using the X-ray method). We compare 1OGS and those four structures for the resolution, coverage and gaps, R-factor, R-free and pH-value at which the structure was resolved in the following table.
PDB-ID | Resolution (Å) | Chain | Positions | Gaps | R-factor | R-free | pH | Temperature (Kelvin) |
---|---|---|---|---|---|---|---|---|
1OGS | 2.0 | A-/B | 40-536 | no | 0.195(obs.) | 0.230 | 4.60 | 100.0 |
PDB-ID | Resolution (Å) | Chain | Positions | Gaps | R-factor | R-free | pH | |
PDB-ID | Resolution (Å) | Chain | Positions | Gaps | R-factor | R-free | pH | |
PDB-ID | Resolution (Å) | Chain | Positions | Gaps | R-factor | R-free | pH | |
PDB-ID | Resolution (Å) | Chain | Positions | Gaps | R-factor | R-free | pH |