Difference between revisions of "Gaucher Disease: Task 08 - Sequence-based mutation analysis"
From Bioinformatikpedia
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| CM057078 || - ||A'''G'''C ⇒ A'''T'''C ||51 || Ser ⇒ Ile || S51I || polar ⇒ nonpolar || neutral ⇒ neutral |
| CM057078 || - ||A'''G'''C ⇒ A'''T'''C ||51 || Ser ⇒ Ile || S51I || polar ⇒ nonpolar || neutral ⇒ neutral |
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− | | [http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=371238435 |
+ | | [http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=371238435 rs371238435] || 465 || CCT ⇒ TCT || 14 || Pro Ser || P14S |||| |
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| CM880035 ||- ||C'''G'''G ⇒ C'''A'''G || 159 || Arg ⇒ Gln || R159Q || polar ⇒ polar || positve ⇒ neutral |
| CM880035 ||- ||C'''G'''G ⇒ C'''A'''G || 159 || Arg ⇒ Gln || R159Q || polar ⇒ polar || positve ⇒ neutral |
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+ | | [http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=371083513 rs371083513] || 1470 || GTA ⇒ ATA ||349 || Val ⇒ Ile || V349I || || |
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Revision as of 14:37, 6 August 2013
Contents
Physicochemical properties and changes of 10 Mutations
Mutations | |||||||
---|---|---|---|---|---|---|---|
mRNA | Protein | Properties | |||||
Reference | Sequence Position | Codon change | Codon Number | Amino Acid change | One letter code | Polarity | Charge (pH) |
CM057078 | - | AGC ⇒ ATC | 51 | Ser ⇒ Ile | S51I | polar ⇒ nonpolar | neutral ⇒ neutral |
rs371238435 | 465 | CCT ⇒ TCT | 14 | Pro Ser | P14S | ||
CM880035 | - | CGG ⇒ CAG | 159 | Arg ⇒ Gln | R159Q | polar ⇒ polar | positve ⇒ neutral |
rs371083513 | 1470 | GTA ⇒ ATA | 349 | Val ⇒ Ile | V349I | ||
CM960697 | - | ACG ⇒ ATG | 408 | Thr ⇒ Met | T408M | polar ⇒ nonpolar | neutral ⇒ neutral |
CM057072 | - | AAC ⇒ AGC | 501 | Asn ⇒ Ser | N501S | polar ⇒ polar | neutral ⇒ neutral |
CM992894 | - | GGA ⇒ GAA | 241 | Gly ⇒ Glu | G241E | nonpolar ⇒ polar | neutral ⇒ negative |
short summary
Mutations inside the structure
pymol-image inside/outside secondary structure
Substitution and Phenotype
blossom
PSSM
Multiple Sequence Alignment
Comparison of different approaches
SIFT, Polyphen, Mutationtaster, SNAP -> one table
References
http://en.wikipedia.org/wiki/Amino_acid
[GENE%20AND%20%22human%22[ORGN]%20AND%20%22snp%22[SNP_CLASS]%20&cmd=DetailsSearch dbSNP]