Gaucher Disease: Task 05 - Homology Modelling

From Bioinformatikpedia
Revision as of 23:55, 9 June 2013 by Kalemanovm (talk | contribs) (Structures from task 04)

Structures from task 04

We assembled the following structures in Gaucher_Disease:_Task_04_-_Structural_Alignment, now we divide them into two groups at

  • > 60% sequence identity
  • < 30% sequence identity (ideally go towards 20%)

For not glucocerebrosidases, we calculated PID as follows:

  • first aligned the two fasta sequences from PDB with ClustalW
  • then calculated the PID using SIAS with default options
Homologous structures to 1ogs_A
> 60% PID < 30% PID
2xwd_A 2f7k_A (9.65%)
2nsx_A 2gep_A (9.66%)
2nt1_A 2isb_A (7.17%)
2djf_B (5.68%)