Difference between revisions of "Gaucher Disease: Task 04 - Structural Alignment"

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(Sequences of Data Set)
(Sequences of Data Set)
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!1OGS || Glucocerebrosidase || Glycosidases (3.20.20.80)|| unfilled binding sites (reference structure)
 
!1OGS || Glucocerebrosidase || Glycosidases (3.20.20.80)|| unfilled binding sites (reference structure)
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!2xwd || Glucocerebrosidase || Glycosidases (3.20.20.80)|| filled binding sites
 
!2xwd || Glucocerebrosidase || Glycosidases (3.20.20.80)|| filled binding sites
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!2nsx || Glucocerebrosidase || Glycosidases (3.20.20.80)|| filled binding sites
 
!2nsx || Glucocerebrosidase || Glycosidases (3.20.20.80)|| filled binding sites
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!2nt1 || || || Sequence identity >60%
 
!2nt1 || || || Sequence identity >60%
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!2f7k/3zr6|| || || unrelated <30%
 
!2f7k/3zr6|| || || unrelated <30%
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!1gep|| || Adolase class I (3.20.20.70)|| identical in CAT
 
!1gep|| || Adolase class I (3.20.20.70)|| identical in CAT
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!2isb|| || Fumarase (3.20.130.10)|| identical in CA
 
!2isb|| || Fumarase (3.20.130.10)|| identical in CA
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!2djf|| || Cysteine proteinases (3.90.70.10)|| identical in C
 
!2djf|| || Cysteine proteinases (3.90.70.10)|| identical in C
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!2qgu|| || Phospholipid-binding protein (1.10.10.640)|| different in C
 
!2qgu|| || Phospholipid-binding protein (1.10.10.640)|| different in C
 
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Revision as of 19:36, 3 June 2013

Exploring Structural Alignments

Sequences of Data Set

Sequence Set
PDB ID Protein name Classification Category
1OGS Glucocerebrosidase Glycosidases (3.20.20.80) unfilled binding sites (reference structure)
2xwd Glucocerebrosidase Glycosidases (3.20.20.80) filled binding sites
2nsx Glucocerebrosidase Glycosidases (3.20.20.80) filled binding sites
2nt1 Sequence identity >60%
2f7k/3zr6 unrelated <30%
1gep Adolase class I (3.20.20.70) identical in CAT
2isb Fumarase (3.20.130.10) identical in CA
2djf Cysteine proteinases (3.90.70.10) identical in C
2qgu Phospholipid-binding protein (1.10.10.640) different in C

CATH: 1ogs 3.20.20 TIM Barrel 3.20 Alpha-Beta Barrel 3 Alpha Beta 1 mostly Alpha

Pymol

LGA

CATH used

Topmatch

SAP/CE

Evaluation of structural alignments and sequence alignments