Difference between revisions of "Gaucher Disease: Task 04 - Structural Alignment"
From Bioinformatikpedia
(→Sequences of Data Set) |
(→Sequences of Data Set) |
||
Line 12: | Line 12: | ||
|- |
|- |
||
!1OGS || Glucocerebrosidase || Glycosidases (3.20.20.80)|| unfilled binding sites (reference structure) |
!1OGS || Glucocerebrosidase || Glycosidases (3.20.20.80)|| unfilled binding sites (reference structure) |
||
+ | |- |
||
!2xwd || Glucocerebrosidase || Glycosidases (3.20.20.80)|| filled binding sites |
!2xwd || Glucocerebrosidase || Glycosidases (3.20.20.80)|| filled binding sites |
||
+ | |- |
||
!2nsx || Glucocerebrosidase || Glycosidases (3.20.20.80)|| filled binding sites |
!2nsx || Glucocerebrosidase || Glycosidases (3.20.20.80)|| filled binding sites |
||
+ | |- |
||
!2nt1 || || || Sequence identity >60% |
!2nt1 || || || Sequence identity >60% |
||
+ | |- |
||
!2f7k/3zr6|| || || unrelated <30% |
!2f7k/3zr6|| || || unrelated <30% |
||
+ | |- |
||
!1gep|| || Adolase class I (3.20.20.70)|| identical in CAT |
!1gep|| || Adolase class I (3.20.20.70)|| identical in CAT |
||
+ | |- |
||
!2isb|| || Fumarase (3.20.130.10)|| identical in CA |
!2isb|| || Fumarase (3.20.130.10)|| identical in CA |
||
+ | |- |
||
!2djf|| || Cysteine proteinases (3.90.70.10)|| identical in C |
!2djf|| || Cysteine proteinases (3.90.70.10)|| identical in C |
||
+ | |- |
||
!2qgu|| || Phospholipid-binding protein (1.10.10.640)|| different in C |
!2qgu|| || Phospholipid-binding protein (1.10.10.640)|| different in C |
||
|- |
|- |
Revision as of 19:36, 3 June 2013
Contents
Exploring Structural Alignments
Sequences of Data Set
Sequence Set | |||
---|---|---|---|
PDB ID | Protein name | Classification | Category |
1OGS | Glucocerebrosidase | Glycosidases (3.20.20.80) | unfilled binding sites (reference structure) |
2xwd | Glucocerebrosidase | Glycosidases (3.20.20.80) | filled binding sites |
2nsx | Glucocerebrosidase | Glycosidases (3.20.20.80) | filled binding sites |
2nt1 | Sequence identity >60% | ||
2f7k/3zr6 | unrelated <30% | ||
1gep | Adolase class I (3.20.20.70) | identical in CAT | |
2isb | Fumarase (3.20.130.10) | identical in CA | |
2djf | Cysteine proteinases (3.90.70.10) | identical in C | |
2qgu | Phospholipid-binding protein (1.10.10.640) | different in C |
CATH: 1ogs 3.20.20 TIM Barrel 3.20 Alpha-Beta Barrel 3 Alpha Beta 1 mostly Alpha