Difference between revisions of "Gaucher Disease: Task 02 - Lab Journal"

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(Created page with "The script run.pl was written and used for the runs. PSSM files - a3m and hhr for HHblits, chk ("checkpoint") and PSSM for Psi-BLAST were created in order to start the search…")
 
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==Runs==
 
The script [[run.pl]] was written and used for the runs. PSSM files - a3m and hhr for HHblits, chk ("checkpoint") and PSSM for Psi-BLAST were created in order to start the search against another database, from big_80 to big for Psi-BLAST and later against a PDB database for the evaluation.
 
The script [[run.pl]] was written and used for the runs. PSSM files - a3m and hhr for HHblits, chk ("checkpoint") and PSSM for Psi-BLAST were created in order to start the search against another database, from big_80 to big for Psi-BLAST and later against a PDB database for the evaluation.
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==Comparison==
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The results were parsed and analysed using the script [[parse_output.pl]].

Revision as of 15:32, 19 May 2013

Runs

The script run.pl was written and used for the runs. PSSM files - a3m and hhr for HHblits, chk ("checkpoint") and PSSM for Psi-BLAST were created in order to start the search against another database, from big_80 to big for Psi-BLAST and later against a PDB database for the evaluation.

Comparison

The results were parsed and analysed using the script parse_output.pl.