Difference between revisions of "Disopred"

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{| style="float: right; border: 1px solid #BBB; margin: .46em 0 0 .2em;"
 
{| style="float: right; border: 1px solid #BBB; margin: .46em 0 0 .2em;"
 
! Author
 
! Author
  +
| Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT
| David T. Jones
 
 
|-
 
|-
 
! Year
 
! Year
| 1999
+
| 2004
 
|-
 
|-
 
! Reference
 
! Reference
| [http://www.ncbi.nlm.nih.gov/pubmed/10493868 PubMed 10493868]
+
| [http://www.ncbi.nlm.nih.gov/pubmed/15019783 PubMed 15019783]
 
|-
 
|-
 
! ML Method
 
! ML Method
  +
| SVM
| Neural Network
 
|-
 
! Architecture
 
| feed-forward back-propagation, single hidden layer
 
 
|}
 
|}
   

Revision as of 20:19, 5 June 2011

DISOPRED

Basic Information

Author Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT
Year 2004
Reference PubMed 15019783
ML Method SVM

Details

FAQ

How to run it locally?

Change in the disopred script the following lines:

# Change database location

set dbane = /data/blast/nr/nr


# Check if there is any path with /usr/local/bin

change all path to /usr/bin (important: change also the path to the perl location)