Compiled list of SNPS

From Bioinformatikpedia
Revision as of 22:35, 9 June 2012 by Boidolj (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

*after SNP: disease causing (HGMD)
+ after SNP: no effect (missense, but not in HGMD)
# after SNP: silent mutation
single *: conserved, probably disease effect (SNPdbe)
single +: little conserved, probably no effect (SNPdbe)
rows tab separated

AA	SNPs	Effect from SNPdbe
1	1A>G* 1A>T+ 2T>G* 3G>A* 3G>T+	*
2
3
4
5
6
7
8
9
10	30C>G#
11
12
13
14
15
16	46T>C*	*
17
18
19
20	58C>T* 59A>T* 60G>C+	+
21
22	65C>A*
23
24
25
26
27
28
29
30
31
32
33
34
35
36	108A>G#
37
38
39	117C>G*	*
40	119C>T*	*
41	121C>T* 122T>C*	*
42	125A>T*	*
43
44
45
46	136G>A*	*
47	140C>A* 140C>T*	*
48	143T>C*	*
49
50
51
52	155T>C*	*
53	157C>T* 158G>A*	+
54	161T>C* 162A>G#	+
55	165T>G*	*
56	168G>T* 168G>A+	+
57	169G>A+	+
58
59	175G>T* 176A>G+	+
60
61	181A>G* 183C>G*	*
62
63	187A>C+	*
64	190C>A+	*
65	193A>G* 194T>A* 194T>C* 194T>G* 195T>G*	*
66	198A>G#
67	199T>C*	*
68	202A>G* 204A>T*	*
69	205C>T*	*
70	208T>C*	*
71	211C>T* 212G>A*	*
72
73
74
75
76	226G>T* 227A>C* 227A>G*	*
77	231T>G*
78	232G>A*	+
79
80
81	241A>C*	+
82
83
84	250G>T*	*
85
86
87	259A>C* 261C>A*	+
88
89	265C>T*	+
90
91
92	275C>T*	+
93
94	281T>G*	+
95	283A>T*	+
96
97	289A>C*	+
98	293T>C*	*
99
100	299A>G*	+
101
102	305T>C*	+
103	307G>A* 307G>T+	+
104	311C>A*	+
105
106
107
108
109
110	329C>T*	+
111	331C>T*
112
113
114
115
116
117
118
119	355C>T*
120	359G>A*
121
122	365C>A*	*
123	368G>T+
124	371C>T*	+
125
126
127
128
129	385G>T* 386A>G* 386A>T+	*
130
131
132	395C>T*
133	399T>C#
134	400C>T*
135
136
137	411C>T#
138
139
140
141
142
143	428A>G*	*
144
145	434A>T*	*
146	436C>T* 438C>T#	*
147	439C>T* 440C>T+	*
148	442G>A*	*
149
150
151	451G>C* 452A>G*	*
152
153
154	460T>A* 460T>C*	*
155	464G>A* 464G>C*	+
156	466G>C+
157	470G>A* 470G>T* 471A>C+	*
158	472C>T* 473G>A* 473G>C*	*
159
160	479A>C*	+
161	482T>C*	*
162
163
164	490A>G* 491T>C*	+*
165	493G>A* 493G>C*	+
166	498C>A* 498C>G*
167	500A>G* 500A>T*	*
168	502T>C*	*
169	506G>A*	*
170	508C>G* 509A>G* 510T>A*	+
171	511G>A* 512G>C* 513G>T#	+
172	514C>T* 516G>T+	*
173	517C>A*	*
174	520A>G* 521T>C*	*
175	523C>G*	*
176	526C>T* 527G>A* 527G>C* 527G>T*	*
177	529G>A* 529G>C* 530T>C*	*
178	533A>G* 533A>T*	*
179	535T>C* 535T>A+	*
180
181
182	545A>G*	*
183	547G>C* 548A>G+	*
184
185
186
187	559T>C* 560G>A* 561G>A* 561G>C*	*
188	563G>A+
189
190	569T>C*	*
191
192
193
194	581T>C*	*
195
196
197	591G>C*
198
199
200
201	601C>T* 602A>G*	*
202	604G>A*
203	608G>A* 609C>G+ 609C>T+	*
204	611A>G+ 612T>G*	+
205	613G>A* 614A>C*	*
206	616T>G* 617A>G* 618C>A* 618C>G*	*
207	619A>G* 620A>G*	+
208
209
210
211	631C>A* 633A>C#	*
212	635T>C*	*
213	638T>C*	*
214
215
216	648C>G*
217	649T>C* 649T>G* 650G>A*	*
218	653G>T*	*
219
220
221	662A>G*	*
222	665A>G* 665A>T*	*
223	667A>T*
224	671T>C* 672T>G*	*
225	673C>A* 673C>G* 674C>G*	*
226	676C>T* 678G>C*	*
227	681G>A#
228
229
230	688G>A* 689T>C* 689T>G*	*
231	691T>C* 692C>T*	*
232	694C>T* 696A>G#
233	699C>A*	*
234
235	704A>C*	+
236
237		+
238	712A>C*	*
239	715G>A* 716G>A* 716G>C* 716G>T*	*
240	718T>G* 719T>C*	*
241	721C>T* 722G>A* 722G>T*	*
242	724C>T*	*
243	727C>T* 728G>A* 728G>T*	*
244	731C>T*	*
245	733G>C* 733G>A+ 734T>A* 734T>C* 735G>A#	*
246	737C>A* 737C>T*	*
247	739G>A* 739G>C* 740G>A* 740G>T*	*
248	743T>C* 743T>G*	*
249	745C>T* 746T>A* 746T>C*	*
250
251
252	754C>G* 754C>T* 755G>A*	*
253
254	760T>A*	*
255	763T>G* 764T>C*	*
256
257	769G>A* 769G>T* 770G>A* 770G>T*	+
258	772C>T#
259	775G>A* 776C>T*	*
260
261	781C>T* 782G>A* 782G>C*	*
262
263	789C>G*	*
264	791A>T*	+
265	793T>G* 794G>A*	*
266	796A>G+ 797C>A+	*
267	799C>G* 799C>T* 801G>C*	*
268	802T>C*	*
269	805A>C* 806T>A*	*
270	808A>G+ 809G>A* 810A>T*	*
271	811C>T* 812A>G+ 813T>G*	*
272	814G>T*
273	817T>C* 818C>T*	*
274	820A>G*	+
275	823C>T* 824C>G* 824C>T*	*
276	826A>G* 827T>A* 827T>G* 828G>T*	+
277	829T>G* 830A>G*	*
278	832A>G* 833C>A* 833C>G* 833C>T*	*
279	837C>T#
280	838G>A* 838G>C+ 839A>C* 839A>G*	*
281	841C>G* 841C>T* 842C>G* 842C>T*	*
282	844G>A* 845A>G*	*
283	847A>T* 848T>A*	*
284	850T>C+
285	853C>T*	*
286	856G>A*	*
287	859C>G*
288	864G>C*	*
289	865G>C+
290	869A>G*	*
291
292
293	877T>A*
294
295	884C>G*
296
297	889C>T* 890G>A* 890G>T*	+
298
299	896T>G*	*
300	898G>T* 899C>T*	*
301	902A>C*
302
303	907T>C* 907T>G*	*
304	911A>G* 912G>A#	*
305
306	916A>G*	*
307
308	922C>G* 922C>T*	*
309	926C>A* 926C>T*	*
310	929C>A* 929C>T*	*
311	932T>C*	*
312	935G>T* 935G>A+	*
313	937G>A* 938C>T*	*
314	940C>A* 940C>T* 941C>A*	+
315	943G>T*	*
316
317	949T>C*
318	953T>C*	*
319
320	960G>C*	*
321	963C>T#
322	964G>A* 965C>G*	*
323	969A>G*
324	970A>G*
325	974A>G* 975C>G*	*
326	977G>A*
327	981T>G*	*
328	982A>G*	*
329
330	990G>C*	*
331	991T>C* 992T>G*	*
332	995G>A* 995G>T*	*
333	997C>T*	*
334	1001G>C* 1002C>T#	*
335
336	1006C>T* 1007A>G*	*
337	1010G>T*	+
338	1012G>T*	+
339
340	1019T>C*	*
341	1021A>T* 1022A>C* 1022A>G*	*
342	1024G>A* 1024G>C*	*
343	1027T>G* 1028A>G* 1028A>T*	*
344	1030G>A* 1030G>C* 1031G>A* 1031G>T*	*
345	1033G>A* 1033G>T*	*
346	1036G>A* 1036G>C*	*
347	1039C>T*	*
348	1042C>G*	*
349	1045T>C* 1045T>G* 1046C>A* 1046C>T*	*
350	1048T>A* 1049C>A*	*
351
352	1054G>C* 1054G>T*	*
353
354
355	1063C>T*
356	1066T>C* 1068C>A* 1068C>G*	*
357	1069T>G*	*
358
359	1076C>G*
360	1078G>T*
361
362	1084C>A*	*
363	1089G>T*	*
364
365
366	1097C>A*	*
367	1099C>G* 1100T>C* 1101G>A*	*
368
369	1105C>G*
370
371	1112A>G*	+
372	1114A>T*	*
373	1117G>A*	*
374
375	1123C>G+	*
376
377	1130A>G*	*
378	1132A>T*	+
379
380	1139C>T*	*
381
382	1146C>G*
383
384
385	1155G>C#
386	1156T>G+ 1157A>G*	*
387	1159T>C* 1161C>A* 1161C>T#	*
388	1162G>A* 1162G>C*	*
389	1166C>A*
390	1169A>G*	*
391	1172G>T*
392	1175T>C+	*
393
394	1180G>C* 1181A>C*	*
395	1183G>C* 1184C>A* 1184C>G*	*
396
397
398	1194A>C* 1194A>G#
399	1197A>T#
400	1198A>C# 1199G>A* 1199G>C*	*
401
402	1204T>C*	*
403	1208C>T*	*
404
405
406	1217T>C* 1218A>G+	*
407	1219C>T* 1220C>T*	*
408	1222C>T* 1223G>A*	*
409
410	1229T>C* 1229T>G*	*
411	1232C>G*
412
413	1237C>A* 1237C>T* 1238G>C*	*
414	1241A>G* 1242C>T#	*
415	1243G>A*	*
416	1246C>A* 1247C>A*
417	1249T>A* 1249T>C* 1249T>G*	*
418	1252A>C* 1253C>A*	*
419	1256A>G*
420
421	1262T>C+
422	1264G>A*
423
424	1270T>C# 1271T>C*
425
426	1278T>C#
427		+
428
429
430	1289T>C*	*
431
432
433
434	1301C>A*
435
436
437
438
439
440
441
442
443
444
445
446
447	1339G>C* 1340C>A*	*
448
449
450
451
452
453