Canavan Task 3 - Sequence-based predictions
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Contents
1
Protocol
2
Secondary Structure Prediction
2.1
Information on Proteins
3
Transmembrane Helix Prediction
3.1
Information on Proteins
4
Signal Peptide Prediction
4.1
Information on Proteins
Protocol
Commands, Source Code and other methodocial issues are kept in the
protocoll
.
Secondary Structure Prediction
Information on Proteins
Identifier
P10775
Q08209
Q9X0E6
Protein
D(3) dopamine receptor
Voltage-gated potassium channel
Aquaporin-4
Organism
Homo sapiens (Human)
Aeropyrum pernix
Rattus norvegicus (Rat)
Sequence length
400
295
323
Subcellular location
Cell membrane; Multi-pass membrane protein
Cell membrane; Multi-pass membrane protein
Membrane; Multi-pass membrane protein
PDB Identifier
3PBL
1ORQ
2D57
Structure
Transmembrane Helix Prediction
Information on Proteins
Identifier
P35462
Q9YDF8
P47863
Protein
D(3) dopamine receptor
Voltage-gated potassium channel
Aquaporin-4
Organism
Homo sapiens (Human)
Aeropyrum pernix
Rattus norvegicus (Rat)
Sequence length
400
295
323
Subcellular location
Cell membrane; Multi-pass membrane protein
Cell membrane; Multi-pass membrane protein
Membrane; Multi-pass membrane protein
PDB Identifier
3PBL
1ORQ
2D57
Structure
Signal Peptide Prediction
Information on Proteins
Identifier
P02768
P11279
P47863
Protein
Serum albumin
Lysosome-associated membrane glycoprotein 1
Aquaporin-4
Organism
Homo sapiens (Human)
Homo sapiens (Human)
Rattus norvegicus (Rat)
Sequence length
609
417
323
Subcellular location
Secreted
Cell membrane; Single-pass type I membrane protein
Membrane; Multi-pass membrane protein
PDB Identifier
1E7I
-
2D57
Structure
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