Difference between revisions of "Canavan Task 3 - Sequence-based predictions"

From Bioinformatikpedia
(Information on Proteins)
(Information on Proteins)
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<td style="border-right:solid;" align="left">'''Structure'''</td>
 
<td style="border-right:solid;" align="left">'''Structure'''</td>
 
<td>[[File:CD_3PBL.jpg|300px]]</td>
 
<td>[[File:CD_3PBL.jpg|300px]]</td>
<td>[[File:CD_1ORQ.jpg]]</td>
+
<td>[[File:CD_1ORQ.jpg|300px]]</td>
<td>[[File:CD_1ORQ.jpg]]</td>
+
<td>[[File:CD_2D57.jpg|300px]]</td>
 
</tr>
 
</tr>
   

Revision as of 12:28, 13 May 2012

Protocol

Commands, Source Code and other methodocial issues are kept in the protocoll.


Secondary Structure Prediction

Information on Proteins

Identifier P10775 Q08209 Q9X0E6
Protein D(3) dopamine receptor Voltage-gated potassium channel Aquaporin-4
Organism Homo sapiens (Human) Aeropyrum pernix Rattus norvegicus (Rat)
Sequence length 400 295 323
Subcellular location Cell membrane; Multi-pass membrane protein Cell membrane; Multi-pass membrane protein Membrane; Multi-pass membrane protein
PDB Identifier 3PBL 1ORQ 2D57
Structure CD 3PBL.jpg CD 1ORQ.jpg CD 2D57.jpg

Transmembrane Helix Prediction

Information on Proteins

Identifier P35462 Q9YDF8 P47863
Protein D(3) dopamine receptor Voltage-gated potassium channel Aquaporin-4
Organism Homo sapiens (Human) Aeropyrum pernix Rattus norvegicus (Rat)
Sequence length 400 295 323
Subcellular location Cell membrane; Multi-pass membrane protein Cell membrane; Multi-pass membrane protein Membrane; Multi-pass membrane protein
PDB Identifier 3PBL 1ORQ 2D57
Structure CD 3PBL.jpg CD 1ORQ.jpg CD 1ORQ.jpg

Signal Peptide Prediction

Information on Proteins

Identifier P02768 P11279 P47863
Protein Serum albumin Lysosome-associated membrane glycoprotein 1 Aquaporin-4
Organism Homo sapiens (Human) Homo sapiens (Human) Rattus norvegicus (Rat)
Sequence length 609 417 323
Subcellular location Secreted Cell membrane; Single-pass type I membrane protein Membrane; Multi-pass membrane protein
PDB Identifier 1E7I - 2D57
Structure CD 1E7I.jpg CD 1ORQ.jpg