Difference between revisions of "CD task5 protocol"

From Bioinformatikpedia
(General Information)
 
(2 intermediate revisions by the same user not shown)
Line 4: Line 4:
   
 
Gene symbol: aspa
 
Gene symbol: aspa
  +
  +
Gene number: 443
   
 
2 splice variants
 
2 splice variants
Line 11: Line 13:
   
   
>gi|73622272:159-1100 Homo sapiens aspartoacylase (ASPA), transcript variant 1, mRNA
+
>gi|73622272|ref|NM_000049.2| Homo sapiens aspartoacylase (ASPA), transcript variant 1, mRNA
  +
TTGTAACAGAAAATTAAAATATACTCCACTCAAGGGAATTCTGTACTTTGCCCTTTGGGTAAAGTCTCAT
ATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCTTTGGAGGAACCCATGGGAATG
 
  +
TTACATTTCTAAACCTTTCTTAAGAAAATCGAATTTCCTTTGATCTCTCTTCTGAATTGCAGAAATCAGA
AGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGAGATTCAGAGAACAGGGCTGGA
 
  +
TAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCTTTG
GGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGATATATTGACTGTGACCTGAAT
 
  +
GAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGAGAT
CGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGCCATATGAAGTGAGAAGGGCTC
 
  +
TCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGATAT
AAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGACATTATTTTTGACCTTCACAA
 
  +
ATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGCCAT
CACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAATAACTTTTTAATTCAGATGTTT
 
  +
ATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGACAT
CATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGATTGAGCATCCTTCCCTCAAAT
 
  +
TATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAATAAC
ATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGGTCCTCAGCCTCAAGGGGTTCT
 
  +
TTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGATTG
GAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTTGATTTTATACATCATTTCAAT
 
  +
AGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGGTCC
GAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAGAGAAAGTTGATTACCCCCGGG
 
  +
TCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTTGAT
ATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCAAGACTGGAAACCACTGCATCC
 
  +
TTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAGAGA
TGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGCGGAGACTGTACCGTGTACCCC
 
  +
AAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCAAGA
GTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAAAGACAACTAAACTAACGCTCA
 
  +
CTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGCGGA
ATGCAAAAAGTATTCGCTGCTGTTTACATTAG
 
  +
GACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAAAGA
  +
CAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTACAT
  +
CTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCAACT
  +
GCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAATAT
  +
ATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGTTTA
  +
TTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTGAAA
  +
TAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA
   
 
*NM_001128085.1 (1368 bp)
 
*NM_001128085.1 (1368 bp)
>gi|189339201|ref|NM_001128085.1| Homo sapiens aspartoacylase (ASPA), transcript variant 2, mRNA
+
>gi|189339201|ref|NM_001128085.1| Homo sapiens aspartoacylase (ASPA), transcript variant 2, mRNA
GAAATGCTCTCCTTTTTCCTAATAAAGCTTTCCACAGAAGACAAACTCTGTACACAAAAAACAAGAAATC
+
GAAATGCTCTCCTTTTTCCTAATAAAGCTTTCCACAGAAGACAAACTCTGTACACAAAAAACAAGAAATC
AGATAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCT
+
AGATAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCT
TTGGAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGA
+
TTGGAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGA
GATTCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGA
+
GATTCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGA
TATATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGC
+
TATATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGC
CATATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGA
+
CATATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGA
CATTATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAAT
+
CATTATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAAT
AACTTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGA
+
AACTTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGA
TTGAGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGG
+
TTGAGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGG
TCCTCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTT
+
TCCTCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTT
GATTTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAG
+
GATTTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAG
AGAAAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCA
+
AGAAAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCA
AGACTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGC
+
AGACTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGC
GGAGACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAA
+
GGAGACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAA
AGACAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTA
+
AGACAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTA
CATCTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCA
+
CATCTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCA
ACTGCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAA
+
ACTGCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAA
TATATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGT
+
TATATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGT
TTATTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTG
+
TTATTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTG
AAATAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA
+
AAATAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA
   
   
 
NCBI Reference Sequence Protein:
 
NCBI Reference Sequence Protein:
 
*NP_000040.1
 
*NP_000040.1
  +
  +
1 mtschiaeeh iqkvaifggt hgneltgvfl vkhwlengae iqrtglevkp fitnpravkk
  +
61 ctryidcdln rifdlenlgk kmsedlpyev rraqeinhlf gpkdsedsyd iifdlhntts
  +
121 nmgctliled srnnfliqmf hyiktslapl pcyvyliehp slkyattrsi akypvgievg
  +
181 pqpqgvlrad ildqmrkmik haldfihhfn egkefppcai evykiiekvd yprdengeia
  +
241 aiihpnlqdq dwkplhpgdp mfltldgkti plggdctvyp vfvneaayye kkeafakttk
  +
301 ltlnaksirc clh
  +
  +
 
*NP_001121557.1
 
*NP_001121557.1
  +
  +
1 mtschiaeeh iqkvaifggt hgneltgvfl vkhwlengae iqrtglevkp fitnpravkk
  +
61 ctryidcdln rifdlenlgk kmsedlpyev rraqeinhlf gpkdsedsyd iifdlhntts
  +
121 nmgctliled srnnfliqmf hyiktslapl pcyvyliehp slkyattrsi akypvgievg
  +
181 pqpqgvlrad ildqmrkmik haldfihhfn egkefppcai evykiiekvd yprdengeia
  +
241 aiihpnlqdq dwkplhpgdp mfltldgkti plggdctvyp vfvneaayye kkeafakttk
  +
301 ltlnaksirc clh

Latest revision as of 19:35, 7 June 2012

General Information

Location : 17p13.3

Gene symbol: aspa

Gene number: 443

2 splice variants

NCBI Reference Sequence DNA:

  • NM_000049.2 (1435 bp)


>gi|73622272|ref|NM_000049.2| Homo sapiens aspartoacylase (ASPA), transcript variant 1, mRNA
TTGTAACAGAAAATTAAAATATACTCCACTCAAGGGAATTCTGTACTTTGCCCTTTGGGTAAAGTCTCAT
TTACATTTCTAAACCTTTCTTAAGAAAATCGAATTTCCTTTGATCTCTCTTCTGAATTGCAGAAATCAGA
TAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCTTTG
GAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGAGAT
TCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGATAT
ATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGCCAT
ATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGACAT
TATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAATAAC
TTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGATTG
AGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGGTCC
TCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTTGAT
TTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAGAGA
AAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCAAGA
CTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGCGGA
GACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAAAGA
CAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTACAT
CTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCAACT
GCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAATAT
ATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGTTTA
TTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTGAAA
TAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA
  • NM_001128085.1 (1368 bp)
>gi|189339201|ref|NM_001128085.1| Homo sapiens aspartoacylase (ASPA), transcript variant 2, mRNA
GAAATGCTCTCCTTTTTCCTAATAAAGCTTTCCACAGAAGACAAACTCTGTACACAAAAAACAAGAAATC
AGATAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCT
TTGGAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGA
GATTCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGA
TATATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGC
CATATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGA
CATTATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAAT
AACTTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGA
TTGAGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGG
TCCTCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTT
GATTTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAG
AGAAAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCA
AGACTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGC
GGAGACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAA
AGACAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTA
CATCTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCA
ACTGCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAA
TATATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGT
TTATTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTG
AAATAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA


NCBI Reference Sequence Protein:

  • NP_000040.1
1   mtschiaeeh iqkvaifggt hgneltgvfl vkhwlengae iqrtglevkp fitnpravkk
61  ctryidcdln rifdlenlgk kmsedlpyev rraqeinhlf gpkdsedsyd iifdlhntts
121 nmgctliled srnnfliqmf hyiktslapl pcyvyliehp slkyattrsi akypvgievg
181 pqpqgvlrad ildqmrkmik haldfihhfn egkefppcai evykiiekvd yprdengeia
241 aiihpnlqdq dwkplhpgdp mfltldgkti plggdctvyp vfvneaayye kkeafakttk
301 ltlnaksirc clh


  • NP_001121557.1
1   mtschiaeeh iqkvaifggt hgneltgvfl vkhwlengae iqrtglevkp fitnpravkk
61  ctryidcdln rifdlenlgk kmsedlpyev rraqeinhlf gpkdsedsyd iifdlhntts
121 nmgctliled srnnfliqmf hyiktslapl pcyvyliehp slkyattrsi akypvgievg
181 pqpqgvlrad ildqmrkmik haldfihhfn egkefppcai evykiiekvd yprdengeia
241 aiihpnlqdq dwkplhpgdp mfltldgkti plggdctvyp vfvneaayye kkeafakttk
301 ltlnaksirc clh