Normal Mode Analysis of ARSA

WEBnm@

We used | http://www.lcdf.org/gifsicle/ to generate the animated gifs:

gifsicle --delay=5 --loop --colors 256 *.gif > anim.gif

Mode	Motion	Vecors	Displacement
mode 7
mode 8
mode 9
mode 10
mode 11
mode 12

ElNemo

Mode	Pymol animation	picture 1 from ElNemo	picture 2 from ElNemo	picture 3 from ElNemo	Fluctuations
Mode 7
Mode 8
Mode 9
Mode 10
Mode 11

Anisotropic Network Model web server

for file in *.png; do convert "$file" "$(basename $file .png).gif";done

	mode 1	mode 2	mode 3	mode 4	mode 5
Motion
Distance
Fluctuations

oGNM – Gaussian network model

	mode 7	mode 8	mode 9	mode 10	mode 11
Motion
Fluctuations

Fluctuations of mode 7-11

Correlation of mode 1-20

Correlation of mode 7-11

NOMAD-Ref

NMA of ARSA

	mode 7	mode 8	mode 9	mode 10	mode 11
Motion
Distance

All-atom NMA of 1BPT

Temperature	mode	mode 8	mode 9	mode 10	mode 11
600K
2000K