Normal Mode Analysis of Glucocerebrosidase
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Contents
1
Introduction
2
Elastic and Gaussian Network Models
2.1
WEBnm@
2.2
elNémo
2.3
Anisotropic Network Model
2.4
oGNM
2.5
NOMAD-Ref
2.6
Discussion
3
All-atom NMA
4
Comparison NMA / MD
Introduction
Elastic and Gaussian Network Models
WEBnm@
Results
Figure 1:
Normal Mode 7 calculated with WEBnm@
Figure 2:
Normal Mode 8 calculated with WEBnm@
Figure 3:
Normal Mode 9 calculated with WEBnm@
Figure 4:
Normal Mode 10 calculated with WEBnm@
Figure 5:
Normal Mode 11 calculated with WEBnm@
elNémo
Results
Figure 6:
Normal Mode 7 calculated with
elNémo
Figure 7:
Normal Mode 8 calculated with
elNémo
Figure 8:
Normal Mode 9 calculated with
elNémo
Figure 9:
Normal Mode 10 calculated with
elNémo
Figure 10:
Normal Mode 11 calculated with
elNémo
Discussion
Anisotropic Network Model
oGNM
NOMAD-Ref
Discussion
All-atom NMA
Comparison NMA / MD
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