Sequence-based mutation analysis BCKDHA
From Bioinformatikpedia
Contents
Subset of mutations
| Reference amino acid | Mutated amino acid | BLOSUM62 | PAM1 | PAM250 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Position | Residue | Properties | Structure | Residue | Properties | Structure | |||
| 29 | G | E | |||||||
| 125 | Q | E | |||||||
| 166 | Y | N | |||||||
| 249 | G | S | |||||||
| 264 | C | W | |||||||
| 265 | R | W | |||||||
| 326 | I | T | |||||||
| 361 | I | V | |||||||
| 409 | F | C | |||||||
| 438 | Y | N | |||||||
PSSM
PsiBlast was run using the following command: blastpgp -i sequence.fasta -j 5 -d /data/blast/nr/nr -C profile.ckp
