ASPA Sequence Based Predictions
From Bioinformatikpedia
Contents
Prediction of Secondary Structure Elements
PsiPred
# PSIPRED HFORMAT (PSIPRED V3.0)
Conf: 987522213466199993246776008999999984450000587389976339987971
Pred: CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHH
AA: MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
10 20 30 40 50 60
Conf: 998788998878786647999999984999999999988199999997428994187898
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC
AA: CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
70 80 90 100 110 120
Conf: 999505864599448999999998762999737862048886301220027861499667
Pred: CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCEEEEEC
AA: NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
130 140 150 160 170 180
Conf: 877898808999999999999998976406998899973479998113515579877700
Pred: CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
AA: PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
190 200 210 220 230 240
Conf: 552467669998546888832213699778518622057770372000011102000100
Pred: EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHCCCCHHHEECCE
AA: AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
250 260 270 280 290 300
Conf: 3544256113309
Pred: EEEEECCCEEECC
AA: LTLNAKSIRCCLH
310
JPred3
MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKKCTRYID ------------EEEEEEEE------HHHHHHHHHH---------EEEEEEEE-HHHHHH-----H CDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTSNMGCTLILEDSR ---------------------HHHHHHHHHHHHHH-------EEEEEE-----------EEEE--- NNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVGPQPQGVLRADILDQMRKM -HHHHHHHHHHHH------EEEEEE---------HHEE----EEEEE---------HHHHHHHHHH IKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIAAIIHPNLQDQDWKPLHPGDPMFLT HHHHHHHHHHH----------EEEEEEEEEE----------EEEE----------------HHE-- LDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAKSIRCCLH ----EEEE----EEEEEEE-----HHH-HHHHHHHHEEE-----EEEE-
DSSP
10 20 30 40 50 60
| | | | | |
1 - 60 EHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKKCTRYIDCD
1 - 60 SSSSSS TTTT HHHHHHHHHHTT 333 TT SSSSSST HHHHHTTTT TTT
1 - 60
1 - 60 AA AA A AA AAA AA AAAA A A AA AAAA AAAA
70 80 90 100 110 120
| | | | | |
61 - 120 LNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTSNMGCTLIL
61 - 120 333 THHHHTT TTT HHHHHHHHHHHHH TTTTTT TSSSSSSS TTT SSSSSS
61 - 120 ** * * ** ** * *
61 - 120 A AAA AAAAAAAAA A A AA AAA AA A
130 140 150 160 170 180
| | | | | |
121 - 180 EDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVGPQPQGVLR
121 - 180 T TT HHHHHHHHHHHHHHTTT SSSSS TT 3333TTSSSSSSSST TT
121 - 180 * ** **
121 - 180 A A A AA AAA AAAA A AAAAAA AA A A A
190 200 210 220 230 240
| | | | | |
181 - 240 ADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIAAIIHPNLQ
181 - 240 HHHHHHHHHHHHHHHHHHHHHHTT SSSSSSSSSSSS TTT TSS TTTT
181 - 240
181 - 240 A AA AA AA AA AAAA AA A A A AAA A AAAAA A AA
250 260 270 280 290 300
| | | | | |
241 - 300 DQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAKSI
241 - 300 T TTT TTTSSSS TT SSS TTT SSSTTT 333TTTT TSSSSSSSSSSS
241 - 300
241 - 300 AA AA AAAAA A AAAAAA AAAAA A AAA A AAA A A
301 - 302 RC
301 - 302
301 - 302
301 - 302 AA
310 320 330 340 350 360
| | | | | |
303 - 362 EHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKKCTRYIDCD
303 - 362 SSSSSS TTTT HHHHHHHHHHHH 3333 TT SSSSSST HHHHHTT T TTT
303 - 362
303 - 362 AA AA AA AAA AA AAAA A A A AA AAAA AAAA
370 380 390 400 410 420
| | | | | |
363 - 422 LNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTSNMGCTLIL
363 - 422 333 THHHHTT TTT HHHHHHHHHHHHH TTTTTT TSSSSSSS TTT SSSSSS
363 - 422 ** *** * ** ****
363 - 422 A AAA AAAAAAAAA A A AA AAA AA A
430 440 450 460 470 480
| | | | | |
423 - 482 EDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVGPQPQGVLR
423 - 482 T TT HHHHHHHHHHHHHHTTT SSSSS TTTT 3333TTSSSSSSSS TT
423 - 482
423 - 482 A A A AA AA AAAA A AAAAAA AA A A
490 500 510 520 530 540
| | | | | |
483 - 542 ADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIAAIIHPNLQ
483 - 542 HHHHHHHHHHHHHHHHHHHHHHTT SSSSSSSSSSSS TTT TSS TTTT
483 - 542 *** *
483 - 542 A AA AA A AA A AA AA A A A AAA A AAAAA A A AA
550 560 570 580 590 600
| | | | | |
543 - 602 DQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAKSI
543 - 602 T TTT TTTSSSS TT SSS TTT SSSTTT THHHHTT TSSSSSSSSSSS
543 - 602 *
543 - 602 AA AA AAAAA A AAAAAA AAAAA A AAA A AAAA A AA
603 - 604 RC
603 - 604
603 - 604
603 - 604 AA
Clearly solvent accessible: A; involved in symmetry contacts: *
pdb id: 2o53
Prediction of disordered regions
DISOPRED
POODLE
...
IUPRED
...
Meta-Disorder
...
Prediction of transmembrane alpha-helices and signal peptides
TMHMM
...
Phobius & PolyPhobius
...
OCTOPUS & SPOCTOPUS
...
SignalP
...
TargetP
...
Prediction of GO terms
GOPET
...
Pfam
...
ProtFun 2.2
...
