Normal mode analysis (Phenylketonuria)
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Contents
Summary
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Normal Mode Analysis
Lab journal
For the analysis, we used the pdb structure 1J8U from the task before (Task 9 - Structure-based mutation analysis).
WEBnm@
Mode 7
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Mode 8
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Mode 9
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Mode 10
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Mode 11
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Mode 12
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elNémo
elNémo provides following outcomes:
- PDB-files with the conformations of the modes
- animations of the modes
- CA-vari (calculates distance fluctuations between all C-alpha atoms)
- R2 (visualization of the mean square displacement of all C-alpha atoms associated with a given mode)
- B-factor analysis: Correlation= 0.534 for 307 C-alpha atoms
- RMSD: only if two structures are used
Mode 7
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Mode 8
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Mode 9
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Mode 10
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Mode 11
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VMD
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References
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