Multiple Sequence Alignment: T-Coffee - set 1
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Revision as of 01:34, 7 May 2013 by Kalemanovm (talk | contribs)
The native protein is colored red in the alignment. The violet marked residues show where the last residues G (A9UD35) and D (D1L2S0) are aligned, in comparison to the other residues these are aligned with, as well as the resulting contigous gap. The residues to which they should be aligned according to the author are colored as well.
CLUSTAL FORMAT for T-COFFEE Version_8.47 [1] [MODE: ], CPU=0.12 sec, SCORE=98, Nseq=10, Len=621 P04062 -------------------------------------------------- tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A -------------------------------------------------- pdb|pdb|2nt1_A -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE -------------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN -------------------------------------------------- tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN -------------------------------------------------- tr|B7Z6S9|B7Z6S9_HUMAN MSDRLFSNPGPAPTPQGCFSRGCGWSGCILPSESYCAGPQSPVPPRRLCR P04062 -----------------------------------MEFSSPSREECPKPL tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A -------------------------------------------------- pdb|pdb|2nt1_A -------------------------------------------------- tr|F6WDY8|F6WDY8_HORSE -----------------------------------MELSSPSREGCLKCP sp|Q2KHZ8|GLCM_BOVIN -----------------------------------MELSSPSREEYPMPR tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN -----------------------------------MEFSSPSREECPKPL tr|B7Z6S9|B7Z6S9_HUMAN LRWDFVLPPVGAAVSLRRRDSGTPVVFSSSNDPEGMEFSSPSREECPKPL P04062 SRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSF tr|A9UD35|A9UD35_DELDE -----------------------------------------CNATYCDSL tr|D1L2S0|D1L2S0_BALPH -------------------------------------VVCVCNATYCDSL pdb|pdb|3gxi_A ------------------------ARPCIPKSFGYSSVVCVCNATYCDSF pdb|pdb|2nt1_A ------------------------ARPCIPKSFGYSSVVCVCNATYCDSF tr|F6WDY8|F6WDY8_HORSE GRVGIMAASFMGLLLLQAVSRASGARPCSPKSFGYSSVVCVCNATYCDSL sp|Q2KHZ8|GLCM_BOVIN GRVGIMAASLMGLLLLHTVSWVSGARPCSPKSFGYSSVVCVCNGTYCDSL tr|F5CB27|F5CB27_DELCA -----------------------------------------CNATYCDSL tr|F5H241|F5H241_HUMAN SRVSIMAGSLTGLLLLQAVSWA---------------------------- tr|B7Z6S9|B7Z6S9_HUMAN SRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSF P04062 DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ tr|A9UD35|A9UD35_DELDE DPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQ tr|D1L2S0|D1L2S0_BALPH DPLTLPDPGTFSRFESTRSGRRMELSLGAIQANRTGTGLLLTLQP----- pdb|pdb|3gxi_A DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ pdb|pdb|2nt1_A DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ tr|F6WDY8|F6WDY8_HORSE DPLTLPAPGTFSRYESTRSGRRMELSLGAIQANRTGTGLLLTLQPDQKFQ sp|Q2KHZ8|GLCM_BOVIN DPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPDQKFQ tr|F5CB27|F5CB27_DELCA DPLTLPDPGTFSRFESTRSGRRMELSLGTIQANRTGTGLLLTLQPD---- tr|F5H241|F5H241_HUMAN -------------------------------------------------- tr|B7Z6S9|B7Z6S9_HUMAN DPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQ P04062 KVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASC tr|A9UD35|A9UD35_DELDE KVK----------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A KVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASC pdb|pdb|2nt1_A KVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASC tr|F6WDY8|F6WDY8_HORSE KVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASC sp|Q2KHZ8|GLCM_BOVIN KVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEYNIIRVPMASC tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN -----------------------------------SGIGYNIIRVPMASC tr|B7Z6S9|B7Z6S9_HUMAN KVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASC P04062 DFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A DFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA pdb|pdb|2nt1_A DFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA tr|F6WDY8|F6WDY8_HORSE DFSIRVYTYADTPDDFQLHNFSLPEEDVKLKIPLIHQALELSQRPISLFA sp|Q2KHZ8|GLCM_BOVIN DFSIRTYTYDDSPDDFQLLNFSLPEEDVKLKIPLIHQALELANRSVSLFA tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN DFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA tr|B7Z6S9|B7Z6S9_HUMAN DFSIRTYTYADTPDDFQLHNFGLPEEDTKLKIPLIHRALQLAQRPVSLLA P04062 SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ pdb|pdb|2nt1_A SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ tr|F6WDY8|F6WDY8_HORSE SPWTSPTWLKTNGAVNGKGSLKGQPGDRYHQTWAKYFVKFLDAYAEHKLQ sp|Q2KHZ8|GLCM_BOVIN SPWTSPTWLKTNGAVNGKGTLKGQAGDLYHKTWARYFVKFLDAYAEHKLR tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ tr|B7Z6S9|B7Z6S9_HUMAN SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQ P04062 FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV pdb|pdb|2nt1_A FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV tr|F6WDY8|F6WDY8_HORSE FWAVTTENEPSAGLISGYPFQCLGFTPEHQRDFIARDLGPTLANSTHRNV sp|Q2KHZ8|GLCM_BOVIN FWAVTAENEPTAGLLTGYPFQCLGFTPEHQRDFIARDLGPILANSTHRDV tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV tr|B7Z6S9|B7Z6S9_HUMAN FWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNV P04062 RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE pdb|pdb|2nt1_A RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE tr|F6WDY8|F6WDY8_HORSE RVLMLDDQRLLLPRWAQVVLADPEAAKYVHGIAVHWYLDFLAPAKATLGE sp|Q2KHZ8|GLCM_BOVIN RLLMLDDQRLLLPRWAQVVLADPEAAKYVHGIAVHWYLDFLAPAKATLGE tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE tr|B7Z6S9|B7Z6S9_HUMAN RLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGE P04062 THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV pdb|pdb|2nt1_A THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV tr|F6WDY8|F6WDY8_HORSE THRLFPDMMLFASEACVGSKFWEQSVRLGSWDRGVQYSHSIITNLLYHVA sp|Q2KHZ8|GLCM_BOVIN THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMRYSHSIITNLLYHVV tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV tr|B7Z6S9|B7Z6S9_HUMAN THRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVV P04062 GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF pdb|pdb|2nt1_A GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF tr|F6WDY8|F6WDY8_HORSE GWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKF sp|Q2KHZ8|GLCM_BOVIN GWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPMFYHLGHFSKF tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF tr|B7Z6S9|B7Z6S9_HUMAN GWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKF P04062 IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|A9UD35|A9UD35_DELDE -------------------------------------------------- tr|D1L2S0|D1L2S0_BALPH -------------------------------------------------- pdb|pdb|3gxi_A IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA pdb|pdb|2nt1_A IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|F6WDY8|F6WDY8_HORSE IPEGSQRVGLDASEKTNLDTVALMHPDGSAVVVVLNRSSKDVPLTIKDPA sp|Q2KHZ8|GLCM_BOVIN IPEGSQRVGLVASKKSDLDTVALLRPDGSAVAVVLNRSSKDVPLTIKDPA tr|F5CB27|F5CB27_DELCA -------------------------------------------------- tr|F5H241|F5H241_HUMAN IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|B7Z6S9|B7Z6S9_HUMAN IPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA P04062 VGFLETISPGYSIHTYLWRRQ tr|A9UD35|A9UD35_DELDE --------------------G tr|D1L2S0|D1L2S0_BALPH --------------------D pdb|pdb|3gxi_A VGFLETISPGYSIHTYLWHRQ pdb|pdb|2nt1_A VGFLETISPGYSIHTYLWHRQ tr|F6WDY8|F6WDY8_HORSE VGFLETVSPGYSIHTYLWRRQ sp|Q2KHZ8|GLCM_BOVIN VGFMETVSPGYSIHTYLWRRQ tr|F5CB27|F5CB27_DELCA --------------------- tr|F5H241|F5H241_HUMAN VGFLETISPGYSIHTYLWRRQ tr|B7Z6S9|B7Z6S9_HUMAN VGFLETISPGYSIHTYLWRRQ
